PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4752480.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

TALE

Protein Properties

Length: 677aa MW: 74178.2 Da PI: 6.9085

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4752480.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.3	1.5e-09	382	419	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LAk++gLt +qV++WF N R + Lj1g3v4752480.1 382 FEHflHPYPKDSDKHMLAKQTGLTRSQVSNWFINARVR 419 554459******************************88 PP
2	BELL	119.5	1.5e-38	246	317	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+s+l+eV++rY+qy++q+++v+ssFe++ag+ sa+ Yt+lAl++iS++FrcLkdai++qi Lj1g3v4752480.1 246 ERQEIQMKKAKLISMLDEVEQRYRQYHNQMEIVVSSFEQAAGISSARTYTALALQTISKQFRCLKDAITGQI 317 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.1E-59	180	315	IPR006563	POX domain
Pfam	PF07526	2.3E-46	185	314	IPR006563	POX domain
PROSITE profile	PS50071	12.195	360	423	IPR001356	Homeobox domain
CDD	cd00086	1.13E-11	363	423	No hit	No description
SMART	SM00389	5.3E-9	363	427	IPR001356	Homeobox domain
SuperFamily	SSF46689	5.99E-17	364	430	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.6E-29	366	430	IPR009057	Homeodomain-like
Pfam	PF05920	2.8E-18	380	419	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MATYYHGNSE IQSAGGGADG LQTLVLMNPG SYIQYSDNTP QQPPQSHTAC NLVFLNAASA 60 ASNNNNNSFS PHAPPTHGQQ FVGIPLQASS SQDLNHHHQQ HHHSVDVPSL HGFMPRMQYN 120 LWNTIDGNPA ARDTPRAQQG LSLSLSPQQV QMGSFREGQA QALSGGSPSS ASGVTHNGAS 180 GVQSVLLSSK YLRAAHELLE EVANVNTELA KKSGGPNNRL IGESSVAGSG GGEGSEKRSA 240 ELSTAERQEI QMKKAKLISM LDEVEQRYRQ YHNQMEIVVS SFEQAAGISS ARTYTALALQ 300 TISKQFRCLK DAITGQIRAV NKNLGEEDCF GGKMEGSRLK YVDHHLRQQR ALQQLGMIQH 360 NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL 420 WKPMVEEMYM EEMKEHENNG SEDKSSKSNE DSSKKMAAAS QEKGPISETE AGSFNSKGQD 480 NPAVSVSRPP TSPMGGNVRN QSGFSFMGSS ELEGITQGSP KKQRNQEMMH STNSVPSIDM 540 DVKSNDANNE HLSMKFGDER QQGRDGYSFM GNQTNFMGGF GQYPIGDIGR FDAEQFTQRF 600 SGNGVSLTLG LDSLPGTHQT FLPNQNIQLG RGLDISEPNE FDAMNTSSPH SSAAAYETIS 660 MQNPKRFAAQ LLPDFVT

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MATYYHGNSE IQSAGGGADG LQTLVLMNPG SYIQYSDNTP QQPPQSHTAC NLVFLNAASA  60
ASNNNNNSFS PHAPPTHGQQ FVGIPLQASS SQDLNHHHQQ HHHSVDVPSL HGFMPRMQYN  120
LWNTIDGNPA ARDTPRAQQG LSLSLSPQQV QMGSFREGQA QALSGGSPSS ASGVTHNGAS  180
GVQSVLLSSK YLRAAHELLE EVANVNTELA KKSGGPNNRL IGESSVAGSG GGEGSEKRSA  240
ELSTAERQEI QMKKAKLISM LDEVEQRYRQ YHNQMEIVVS SFEQAAGISS ARTYTALALQ  300
TISKQFRCLK DAITGQIRAV NKNLGEEDCF GGKMEGSRLK YVDHHLRQQR ALQQLGMIQH  360
NAWRPQRGLP ERSVSVLRAW LFEHFLHPYP KDSDKHMLAK QTGLTRSQVS NWFINARVRL  420
WKPMVEEMYM EEMKEHENNG SEDKSSKSNE DSSKKMAAAS QEKGPISETE AGSFNSKGQD  480
NPAVSVSRPP TSPMGGNVRN QSGFSFMGSS ELEGITQGSP KKQRNQEMMH STNSVPSIDM  540
DVKSNDANNE HLSMKFGDER QQGRDGYSFM GNQTNFMGGF GQYPIGDIGR FDAEQFTQRF  600
SGNGVSLTLG LDSLPGTHQT FLPNQNIQLG RGLDISEPNE FDAMNTSSPH SSAAAYETIS  660
MQNPKRFAAQ LLPDFVT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	369	427	5	63	Homeobox protein Meis2
3k2a_B	4e-16	369	427	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.20346	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4752480.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP010447	0.0	AP010447.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT41E03, TM1391, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027353288.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_027353290.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_027353291.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_027353292.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_027353293.1	0.0	BEL1-like homeodomain protein 1
Refseq	XP_027353294.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	1e-173	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	V7D1A0	0.0	V7D1A0_PHAVU; Uncharacterized protein
STRING	XP_007162972.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1627	34	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-148	BEL1-like homeodomain 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]