PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4722780.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family B3
Protein Properties Length: 277aa    MW: 32020.2 Da    PI: 7.6677
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4722780.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3105.52.8e-3377178199
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                      f+k ltpsdv+k++rlv+pk++ae+h   ++ + +++ l++edesg+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+F++++ +  +
  Lj1g3v4722780.1  77 FEKPLTPSDVGKLNRLVIPKQHAEKHfplDSAESKGMLLSFEDESGKLWRFRYSYWNSSQSYVLTKGWSRYVKDKRLDAGDVVLFHRHRAHPHR 170
                      99***************************888889***************************************************87767777 PP

                      .EEEEE-S CS
               B3  92 lvvkvfrk 99 
                      ++++ +r+
  Lj1g3v4722780.1 171 FFITCRRR 178
                      78888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.2E-4071184IPR015300DNA-binding pseudobarrel domain
CDDcd100175.57E-2976177No hitNo description
SuperFamilySSF1019363.14E-3276179IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.52277179IPR003340B3 DNA binding domain
PfamPF023626.8E-3077178IPR003340B3 DNA binding domain
SMARTSM010194.1E-2477178IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MSINQQQLWW TQHQQQNLIH PQFHNPLSSS PSPSPSSSST HRREDGELDQ EEQDYSITRS  60
RNKEDEEPAE EEMEGMFEKP LTPSDVGKLN RLVIPKQHAE KHFPLDSAES KGMLLSFEDE  120
SGKLWRFRYS YWNSSQSYVL TKGWSRYVKD KRLDAGDVVL FHRHRAHPHR FFITCRRRNA  180
QPAPNAAAAF YPPAPHPFTY HPHLHTGGGS QGQNHKEESA PGGNSSGSKV LRLFGVNMEC  240
QLPDSQTQQF YHHHHQQPSS YSSPNNTHHH MLRQQPY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A3e-47721783113B3 domain-containing transcription factor NGA1
5os9_B3e-47721783113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4722780.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150418e-31AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003553608.13e-89B3 domain-containing protein At2g36080
RefseqXP_028218899.13e-89B3 domain-containing protein At2g36080-like
SwissprotQ8GYJ22e-61Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLA0A445FIT97e-88A0A445FIT9_GLYSO; B3 domain-containing protein
TrEMBLK7MZA27e-88K7MZA2_SOYBN; Uncharacterized protein
STRINGGLYMA19G38340.21e-88(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57393452
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-49B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]