PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4693000.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 182aa    MW: 21655.4 Da    PI: 8.1816
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4693000.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.8e-192782156
                     TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                     r k++++t+eq e Le+ F+++ +++ e++++L+k+lgL+ rq+ vWFqNrR ++k
  Lj1g3v4693000.2 27 REKKRRLTSEQMESLERSFQEEIKLDPERKTKLSKELGLQPRQIAVWFQNRRSRWK 82
                     567889*************************************************9 PP
2HD-ZIP_I/II118.43.8e-3828120193
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                      ekkrrl++eq+++LE+sF+ee kL+perK++l++eLglqprq+avWFqnrR R+ktkqlE+ y++L++++d +++e+++L++ev  L+++l+e
  Lj1g3v4693000.2  28 EKKRRLTSEQMESLERSFQEEIKLDPERKTKLSKELGLQPRQIAVWFQNRRSRWKTKQLEHLYDVLRQEFDVISKEKHKLQQEVMMLKARLRE 120
                      69**************************************************************************************99976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.23E-191486IPR009057Homeodomain-like
PROSITE profilePS5007118.2692484IPR001356Homeobox domain
PfamPF000462.1E-162782IPR001356Homeobox domain
SMARTSM003895.2E-172788IPR001356Homeobox domain
CDDcd000861.21E-132785No hitNo description
Gene3DG3DSA:1.10.10.601.1E-203091IPR009057Homeodomain-like
PRINTSPR000312.5E-55564IPR000047Helix-turn-helix motif
PROSITE patternPS0002705982IPR017970Homeobox, conserved site
PRINTSPR000312.5E-56480IPR000047Helix-turn-helix motif
PfamPF021837.6E-884118IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MEVKQPALTE TSQRSLSRMD SENNGSREKK RRLTSEQMES LERSFQEEIK LDPERKTKLS  60
KELGLQPRQI AVWFQNRRSR WKTKQLEHLY DVLRQEFDVI SKEKHKLQQE VMMLKARLRE  120
QQCYNRMQTL GGYREISGEE TEESTLEALR GSNKSSIQQA EEGYCSFTME DYNTVSIMPY  180
YP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17684RRSRWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4693000.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027353383.11e-80putative homeobox-leucine zipper protein ATHB-51
SwissprotQ9LZR02e-44ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A371FAI62e-79A0A371FAI6_MUCPR; Putative homeobox-leucine zipper protein ATHB-51 (Fragment)
STRINGXP_007162834.12e-76(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.17e-47homeobox 51
Publications ? help Back to Top
  1. Andres RJ, et al.
    Modifications to a LATE MERISTEM IDENTITY1 gene are responsible for the major leaf shapes of Upland cotton (Gossypium hirsutum L.).
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. E57-E66
    [PMID:27999177]
  2. Vuolo F, et al.
    LMI1 homeodomain protein regulates organ proportions by spatial modulation of endoreduplication.
    Genes Dev., 2018. 32(21-22): p. 1361-1366
    [PMID:30366902]