PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4693000.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 182aa MW: 21655.4 Da PI: 8.1816 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.8e-19 | 27 | 82 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r k++++t+eq e Le+ F+++ +++ e++++L+k+lgL+ rq+ vWFqNrR ++k Lj1g3v4693000.1 27 REKKRRLTSEQMESLERSFQEEIKLDPERKTKLSKELGLQPRQIAVWFQNRRSRWK 82 567889*************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 118.4 | 3.8e-38 | 28 | 120 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrl++eq+++LE+sF+ee kL+perK++l++eLglqprq+avWFqnrR R+ktkqlE+ y++L++++d +++e+++L++ev L+++l+e Lj1g3v4693000.1 28 EKKRRLTSEQMESLERSFQEEIKLDPERKTKLSKELGLQPRQIAVWFQNRRSRWKTKQLEHLYDVLRQEFDVISKEKHKLQQEVMMLKARLRE 120 69**************************************************************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.23E-19 | 14 | 86 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.269 | 24 | 84 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.1E-16 | 27 | 82 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-17 | 27 | 88 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.21E-13 | 27 | 85 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-20 | 30 | 91 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 2.5E-5 | 55 | 64 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 59 | 82 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 2.5E-5 | 64 | 80 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 7.6E-8 | 84 | 118 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 182 aa Download sequence Send to blast |
MEVKQPALTE TSQRSLSRMD SENNGSREKK RRLTSEQMES LERSFQEEIK LDPERKTKLS 60 KELGLQPRQI AVWFQNRRSR WKTKQLEHLY DVLRQEFDVI SKEKHKLQQE VMMLKARLRE 120 QQCYNRMQTL GGYREISGEE TEESTLEALR GSNKSSIQQA EEGYCSFTME DYNTVSIMPY 180 YP |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 76 | 84 | RRSRWKTKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4693000.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027353383.1 | 1e-80 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 2e-44 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A371FAI6 | 2e-79 | A0A371FAI6_MUCPR; Putative homeobox-leucine zipper protein ATHB-51 (Fragment) | ||||
STRING | XP_007162834.1 | 2e-76 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3394 | 34 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 7e-47 | homeobox 51 |
Publications ? help Back to Top | |||
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