PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4668100.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C2H2
Protein Properties Length: 296aa    MW: 32834.7 Da    PI: 8.6532
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4668100.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.0014114136123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+C+ C+++Fs+   L  H  +H
  Lj1g3v4668100.1 114 YECKTCNRCFSSFQALGGHRASH 136
                      99**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.05E-9113136No hitNo description
PROSITE profilePS5015710.533114141IPR007087Zinc finger, C2H2
PfamPF139121.2E-9114138IPR007087Zinc finger, C2H2
SMARTSM003550.21114136IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280116136IPR007087Zinc finger, C2H2
SuperFamilySSF576672.05E-9199226No hitNo description
PfamPF139123.5E-13203227IPR007087Zinc finger, C2H2
SMARTSM003550.019204226IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.494204226IPR007087Zinc finger, C2H2
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MQDQEDHQHV VVGCKDQMQM IIKGKRTKRQ RLPSPLRLTM STTTTSNSSA TTTTTSIDHE  60
LRNSTTEEEE DMANCLILLA QGNHHHTQKK FASSKLQLVD LNNNNNNKER LYLYECKTCN  120
RCFSSFQALG GHRASHKKLK ANNAAASCAP DQKEAITTTF VNDHHGFEHP TNTNTNTNLT  180
LQLSSRGLYG SSTVTPTTTK SKVHECSICG AEFQSGQALG GHMRRHRISV SNSAAISMSD  240
IGANNQEAKK ARNNVLKLDL NLPAPEDDNS RESKFPFQSK EKVIVFSATS LVDCHY
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4668100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0044790.0AP004479.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT03H13, TM0012b, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020213961.19e-97zinc finger protein ZAT5
TrEMBLA0A151TVH31e-92A0A151TVH3_CAJCA; Zinc finger protein 1
STRINGGLYMA19G37010.21e-89(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-47C2H2 family protein