PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4593270.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 290aa    MW: 32481.5 Da    PI: 7.6549
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4593270.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.74.2e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W++eEd +l++ +++ G+g +W + ++++g++R++k+c++rw++yl
  Lj1g3v4593270.1 14 RGPWSPEEDAKLKEFIEKNGTGgNWIALPQKVGLKRCGKSCRLRWLNYL 62
                     89*********************************************97 PP
2Myb_DNA-binding37.65.1e-1269111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++  Ed+++  +++  G++ W+ Ia++++ gRt++++k++w++
  Lj1g3v4593270.1  69 GEFSDAEDKIICSLFASIGSR-WSIIASRLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.194966IPR017930Myb domain
SuperFamilySSF466893.72E-2611109IPR009057Homeodomain-like
SMARTSM007171.1E-121364IPR001005SANT/Myb domain
PfamPF002491.4E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.9E-231569IPR009057Homeodomain-like
CDDcd001672.62E-91662No hitNo description
PROSITE profilePS5129415.79467117IPR017930Myb domain
SMARTSM007171.6E-1167115IPR001005SANT/Myb domain
PfamPF002496.6E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2270117IPR009057Homeodomain-like
CDDcd001671.36E-770111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MGRAPCCDKA NVKRGPWSPE EDAKLKEFIE KNGTGGNWIA LPQKVGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSDAEDKIIC SLFASIGSRW SIIASRLPGR TDNDIKNYWN TKLKKKMMMA  120
MNHSAVRKPP QQATFLSILQ NSTPSSSNSF FQAQESFIHP PQKFQFQFSS NSFVFGGETT  180
SCSSSSDGSC NNKTSHVTDP DLGYGEGCVG STFMEQIGGV DYLYNGVEDT QKLMFNNGDG  240
VSGWTEKQNG LWEENPMDNG LEEIKELIST SSCNNFLFGD KKTEEKVMYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-24141177108B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.259640.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4593270.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN8635390.0JN863539.1 Lotus japonicus R2R3MYB transcription factor (MYB169t) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027352210.11e-143transcription factor RAX2-like
TrEMBLI3RSY91e-164I3RSY9_LOTJA; R2R3MYB transcription factor (Fragment)
STRINGXP_007162775.11e-136(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.14e-74myb domain protein 36