PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4483810.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 234aa MW: 26303.1 Da PI: 6.1614 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51 | 3.3e-16 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd+ll+++++ +G +W++ ++ g+ R++k+c++rw +yl Lj1g3v4483810.1 14 KGPWSQEEDLLLINYINTYGHANWRALPKQAGLLRCGKSCRLRWANYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 50.1 | 6.2e-16 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+++ eE++ +++++++lG++ W++Ia++++ gRt++++k+ w+++l Lj1g3v4483810.1 67 RGNFSREEEDEIINLHELLGNR-WSAIAARLP-GRTDNEIKNVWHTHL 112 89********************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.8E-24 | 5 | 64 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.366 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.77E-29 | 10 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.1E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.6E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.07E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 24.901 | 62 | 116 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-25 | 65 | 116 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-14 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.9E-15 | 67 | 112 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.10E-10 | 69 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MGRAPCCEKM GLKKGPWSQE EDLLLINYIN TYGHANWRAL PKQAGLLRCG KSCRLRWANY 60 LRPDIKRGNF SREEEDEIIN LHELLGNRWS AIAARLPGRT DNEIKNVWHT HLKKRLQPQT 120 KQKQTNLDLD ASKSNKDAKK EHQEDEGPRS PQQCSSSNSD NMSSLTNSSS IAPSTNHDDM 180 SINDVHNVNF DSLENSLALD EDFWSEVLSS DNSGETSGVV PATTGVDYQL AYCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 4e-26 | 12 | 116 | 5 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4483810.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP010876 | 0.0 | AP010876.1 Lotus japonicus genomic DNA, clone: LjT32G20, TM2116b, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020213217.1 | 1e-105 | transcription factor MYB14 | ||||
Swissprot | Q6K1S6 | 4e-77 | MYB30_ORYSJ; Transcription factor MYB30 | ||||
TrEMBL | A0A151TUL4 | 1e-103 | A0A151TUL4_CAJCA; Myb-related protein Myb4 | ||||
STRING | GLYMA03G31980.1 | 1e-101 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31180.1 | 2e-76 | myb domain protein 14 |
Publications ? help Back to Top | |||
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