PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v4480290.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

bHLH

Protein Properties

Length: 235aa MW: 25858.9 Da PI: 7.0306

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v4480290.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.4	0.00015	218	234	4	20
HHHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsaf 20 +h e+Er+RR+++N++f Lj1g3v4480290.2 218 NHVEAERQRREKLNQRF 234 799************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	7.9E-17	2	90	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	8.861	214	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MHMFYLTSAY YVFGFNSQCG PGSSFKCSKS IWASEAASCL NQYESRSFLA KLAGFQTVVF 60 VPFKGGGVEL GSKEMMPEEQ GVLDMVRATF GESSSAQGKV LPKIFGHELS LGDTKSQSIT 120 ISFSPKVEDD SGFTSDSYEV QALGVNHAYG NSSNGCIGDG EAKMFPQLNQ MIPGNFNPQA 180 RVSSLDLGNE DASSPHLDDR KPRKRGRKPA NGREEPLNHV EAERQRREKL NQRFY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	199	207	RKPRKRGRK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269\|PubMed:30610166}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00099	PBM	Transfer from AT4G16430	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v4480290.2

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269\|PubMed:30610166}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027364954.1	1e-140	transcription factor bHLH3
Swissprot	A0A3Q7H216	2e-73	MTB3_SOLLC; Transcription factor MTB3
TrEMBL	A0A072UDK3	1e-136	A0A072UDK3_MEDTR; ABA-inducible bHLH-type transcription factor
STRING	XP_004493757.1	1e-133	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	3e-53	bHLH family protein

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Sun H,Fan HJ,Ling HQ Genome-wide identification and characterization of the bHLH gene family in tomato. BMC Genomics, 2015. 16: p. 9 [PMID:25612924] Liu Y, et al. MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop. Plant Cell, 2019. 31(1): p. 106-127 [PMID:30610166]