PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4480290.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 473aa    MW: 52144.7 Da    PI: 6.1089
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4480290.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.5e-12355401455
                      HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                      +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  Lj1g3v4480290.1 355 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITHITDLQ 401
                      799***********************66......*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-3851227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.456351400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-18354421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.35E-14354405No hitNo description
Gene3DG3DSA:4.10.280.106.9E-17355418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-9355401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-14357406IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MTAERFCENE EDKAKLESVL GAEAVAFFSS AVSNDVFADV IVPPSPDLGT HQRLCHLVEV  60
SKWDYAILWQ VAGLKSGGYV LKWSDGHCQD PKVGQRSEQQ EEEKDGVKKQ VLQKVHACCG  120
GSDSKDAIFT RLDRVSDMHM FYLTSAYYVF GFNSQCGPGS SFKCSKSIWA SEAASCLNQY  180
ESRSFLAKLA GFQTVVFVPF KGGGVELGSK EMMPEEQGVL DMVRATFGES SSAQGKVLPK  240
IFGHELSLGD TKSQSITISF SPKVEDDSGF TSDSYEVQAL GVNHAYGNSS NGCIGDGEAK  300
MFPQLNQMIP GNFNPQARVS SLDLGNEDAS SPHLDDRKPR KRGRKPANGR EEPLNHVEAE  360
RQRREKLNQR FYALRAVVPN ISKMDKASLL GDAITHITDL QKKIKLLETE KDMTGKKDQQ  420
LPLPDIDFQS RQDDAVVRVS CPLDTHPVSG IVKMFREHQI VAQDSSVSTA QDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A9e-27349411264Transcription factor MYC2
5gnj_B9e-27349411264Transcription factor MYC2
5gnj_E9e-27349411264Transcription factor MYC2
5gnj_F9e-27349411264Transcription factor MYC2
5gnj_G9e-27349411264Transcription factor MYC2
5gnj_I9e-27349411264Transcription factor MYC2
5gnj_M9e-27349411264Transcription factor MYC2
5gnj_N9e-27349411264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1336344RKPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.118724e-93pod| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4480290.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013449847.10.0transcription factor bHLH3
SwissprotA0A3Q7H2161e-168MTB3_SOLLC; Transcription factor MTB3
TrEMBLA0A072UDK30.0A0A072UDK3_MEDTR; ABA-inducible bHLH-type transcription factor
STRINGXP_004493757.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-124bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]