PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Lj1g3v4467990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 134aa MW: 15278 Da PI: 4.5172 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 40.3 | 1.1e-12 | 72 | 133 | 1 | 62 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgC 62 +fY++YAk GF rk+ ++ ++g++++r++vC+++g+r++++ k ++ r+ ++ tr++C Lj1g3v4467990.1 72 DFYERYAKCSGFVSRKDDVYRD-EDGNVVTRQLVCNRQGQRDQKHFKkIDRVRKAKPITRISC 133 6*******************98.8888**************9998774678889999****99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.9E-11 | 72 | 133 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 134 aa Download sequence Send to blast |
MAKLVEGDCV NLCDDEDINN VELNDISCEG VYGDKDKDGK TDNEGEGVKP IMMLTAEEIR 60 DLEFSSEAEA CDFYERYAKC SGFVSRKDDV YRDEDGNVVT RQLVCNRQGQ RDQKHFKKID 120 RVRKAKPITR ISCP |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Lj1g3v4467990.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126074.1 | 5e-25 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | I3S3C6 | 7e-35 | I3S3C6_LOTJA; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF9653 | 6 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G07500.1 | 2e-10 | FAR1 family protein |