PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4467960.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 378aa MW: 41937.5 Da PI: 9.0583 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 98.4 | 4.7e-31 | 293 | 351 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ ++p+++++tYeg+Hnh+k Lj1g3v4467960.1 293 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCLDEPSMLIVTYEGDHNHPK 351 99************************988****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 2.3E-16 | 244 | 289 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 3.2E-33 | 279 | 351 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.746 | 286 | 352 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.28E-27 | 289 | 351 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-37 | 291 | 351 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.7E-27 | 293 | 350 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 378 aa Download sequence Send to blast |
MEDLSMVEAE MEEVEEANRA AVESCHRVIS MLSQPQDQVE YKNLMVETGE AVKKFKRVVS 60 LLSNGGVGHA RVRKLKKLPI PFSQSILKDN PNCKTNHNQS KTFEFPQIGF PDNSVQELGS 120 SVRSSICLGN GNPSLELSSN GKNPLVIAQQ PLSTHYNILQ QQQQLQRLSW QQLQMKQQAE 180 MMFRRKNGVI NLNFDNSSCT PSMSCTRSFV SSLSIDGSLA NMDGSAFQLA GAAHPSDQNS 240 EQHKRKCSAG GDEGSTKCGS SAKCHCSKKR KHRVKRSIKV PAVSNRIADI PPDDYSWRKY 300 GQKPIKGSPH PRGYYKCSSV RGCPARKHVE RCLDEPSMLI VTYEGDHNHP KLPSQCANAA 360 ELNQDQAPSF NLSKPLEP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 9e-20 | 289 | 353 | 12 | 75 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4467960.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027365339.1 | 0.0 | probable WRKY transcription factor 21 | ||||
Swissprot | O04336 | 1e-118 | WRK21_ARATH; Probable WRKY transcription factor 21 | ||||
TrEMBL | A0A0B2RD39 | 0.0 | A0A0B2RD39_GLYSO; Putative WRKY transcription factor 21 | ||||
TrEMBL | A0A0R0KWS7 | 0.0 | A0A0R0KWS7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA02G15920.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2637 | 34 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30590.1 | 3e-94 | WRKY DNA-binding protein 21 |