PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4350060.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family HD-ZIP
Protein Properties Length: 333aa    MW: 36907.4 Da    PI: 7.8083
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4350060.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.41.1e-17167221256
                      T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      rk+ ++tk+q   Lee F+++ +++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Lj1g3v4350060.1 167 RKKLRLTKQQSAYLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 221
                      788899***********************************************98 PP
2HD-ZIP_I/II125.42.5e-40167256191
      HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +kk+rl+k+q++ LEesF+e+++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +l
  Lj1g3v4350060.1 167 RKKLRLTKQQSAYLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLQKELQELR-AL 256
                      69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046189.0E-598128IPR006712HD-ZIP protein, N-terminal
Gene3DG3DSA:1.10.10.603.5E-18146224IPR009057Homeodomain-like
SuperFamilySSF466893.08E-18158224IPR009057Homeodomain-like
PROSITE profilePS5007117.167163223IPR001356Homeobox domain
SMARTSM003894.9E-15165227IPR001356Homeobox domain
CDDcd000862.31E-15167224No hitNo description
PfamPF000463.4E-15167221IPR001356Homeobox domain
PROSITE patternPS000270198221IPR017970Homeobox, conserved site
CDDcd146860.00675216255No hitNo description
PfamPF021837.1E-11223257IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.4E-24223266IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MELALSLGDA RKSFSLLENL TKSSNKDALG FSIPQEETGK SSEEKRGSSD PPVQLDLLPS  60
TPVLRPHPPS SHIRIPWLTD ALGIERVTPE VPARVLNNVN RLPLLPAVEV DTDDGAAISS  120
PNSAVSSFQM DFLLINSNAD AAMNKRDYHE FESADRGSDD DENGSTRKKL RLTKQQSAYL  180
EESFKEHTTL NPKQKLALAK QLNLRPRQVE VWFQNRRART KLKQTEVDCE YLKRCCETLT  240
EENRRLQKEL QELRALKSCQ PFYMQLPATT LTMCPSCERV ATNTTTGAAN NNQTTSPTAT  300
ANNNNNNNNG SQIPAALSLG KPKMSPFPNG QAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165171TRKKLRL
2215223RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4350060.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016207437.11e-152homeobox-leucine zipper protein HOX11
RefseqXP_025662745.11e-152homeobox-leucine zipper protein HOX11
SwissprotP466651e-86HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A444YH981e-151A0A444YH98_ARAHY; Uncharacterized protein
STRINGGLYMA09G16790.11e-135(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23353382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.11e-70homeobox from Arabidopsis thaliana