PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4317600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 164aa    MW: 17374.7 Da    PI: 9.6919
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4317600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.67.6e-073659225
                     -S---SGGGGTS--TTTTT-SS-S CS
          zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                     k ++C  f+ t  C++G++C+F H
  Lj1g3v4317600.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                     7789******************** PP
2zf-CCCH29.51.3e-09101126227
                      -S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                      kt++C+ f     Ck+Gd+C+FaHg+
  Lj1g3v4317600.1 101 KTRICNKFNTAEGCKFGDKCHFAHGE 126
                      8***********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-63560IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-53659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.3E-83659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-1498129IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-898130IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.6199127IPR000571Zinc finger, CCCH-type
SMARTSM003566.6E-499126IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-7101126IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MDFRKRGRPE PGFNSNGGIK KSKQELESLS SGVGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAH MMNLAPSAQA PPRNVAAPPP PVPNGSTPAV KTRICNKFNT AEGCKFGDKC  120
HFAHGEWELG KHIAPSFDDH RPIGHAPAGR IGGRMEPPPG PATG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.79800.0flower| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4317600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1462240.0BT146224.1 Lotus japonicus clone JCVI-FLLj-17O9 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350856.18e-95zinc finger CCCH domain-containing protein 31 isoform X1
SwissprotQ7F8R07e-48C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLI3T0H61e-115I3T0H6_LOTJA; Uncharacterized protein
STRINGGLYMA19G32910.14e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF146232102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.15e-30C3H family protein