PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4290130.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 343aa    MW: 37775.2 Da    PI: 5.8895
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4290130.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.11.5e-08187234455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Lj1g3v4290130.2 187 SHSLAERARREKINARMKLLQELVPGC----DKISGTALVLDEIINHVQSLQ 234
                      8*************************9....788999999999999999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.1E-15181252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.12E-9181238No hitNo description
PROSITE profilePS5088814.538183233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-14184251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.1E-6187234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-8189239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006388Biological ProcesstRNA splicing, via endonucleolytic cleavage and ligation
GO:0000213Molecular FunctiontRNA-intron endonuclease activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MEEQSTVGFR GSTPDGGLVL ESIQFNDEIQ GIVSPVPAPE NASSFTALLE LPPTQAVELL  60
HSPNVNQKPY LLGSFNGNLT FPSNAALIER AAKYSVFAGE NNNSPPVKNE PQETDSNPCS  120
TQGYVSDPAV ENKNQRSAAA KRKEREKKGR GSSSKKSKSV ADESSGGDGE KLPYVHVRVR  180
RGQATDSHSL AERARREKIN ARMKLLQELV PGCDKISGTA LVLDEIINHV QSLQRQVEIL  240
SMKLAAVNPR IDFNLDSLLT ADGVSLMDSN LPSMVTPLMW PENPLNGNRP HYQQQWQFDA  300
FHQPLWAREE DNHNFMTPET SLLSYDSSAK SASLHSNQLK MEL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.49850.0cell culture| floral bud| flower| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4290130.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007162273.10.0hypothetical protein PHAVU_001G138200g
SwissprotQ8VZ024e-98BH048_ARATH; Transcription factor bHLH48
TrEMBLV7CVR70.0V7CVR7_PHAVU; Uncharacterized protein
STRINGXP_007162273.10.0(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49852945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.23e-98bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]