PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4275530.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 729aa    MW: 79563.2 Da    PI: 6.3798
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4275530.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.32.4e-07306326526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      +C++f++ G C++Gd C +aHg
  Lj1g3v4275530.1 306 PCPDFRK-GACRRGDMCEYAHG 326
                      8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0024840004070IPR002110Ankyrin repeat
Gene3DG3DSA:1.25.40.201.4E-1744188IPR020683Ankyrin repeat-containing domain
CDDcd002042.09E-1445176No hitNo description
SuperFamilySSF484031.26E-1645169IPR020683Ankyrin repeat-containing domain
PfamPF127968.1E-1148156IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.687190IPR020683Ankyrin repeat-containing domain
SMARTSM002480.01987117IPR002110Ankyrin repeat
PROSITE profilePS5008811.541122157IPR002110Ankyrin repeat
SMARTSM002480.0021122154IPR002110Ankyrin repeat
SMARTSM003564.0E-6301327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.6E-4305328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.582306328IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5306326IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4334364IPR000571Zinc finger, CCCH-type
SMARTSM0035633336359IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MCCEFERLNP APSLSLSPTL TRAVASRNYV MNHFTVDTGD SLVSLLELAA NNDVEGFKRL  60
IECDPSSVDE VGLWYGRRKG SKQMVNEQRT PLMVAATYGS IDIMKLILAV SDVDINRPCG  120
LDKSTALHCA ASGGAVNAVE AVRLLLAAGA DPNSVDANGH KPVDVIVFPP KLEHVKNSLE  180
ELLQADDSDA GGCNLRVITT SLNAYSLPLS TSPENGSPSA LDLQLKSKSS DVPAFSVSEK  240
KEYPVDPSLP DIKNSIYSTD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKY  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTNCSR RICFFAHTAE  360
ELRPLYVSTG SAVPSPRANA SSAMDFAAAM SMLPGSPSSM SVMSPSAFTP PMSPSANGIS  420
HSSVAWPQPN IPALHLPGSN LQSSRLRSSL HARDIPFDDF DMLSDYDQQQ LLNELACLSP  480
RPMNSNPLNR SGRMKPLTPS NLDELFSAES SSPRYADPTL NSAVFSPTHK SAVFNQFQQQ  540
QSMLSPVNTN FSPKNAEHPF LQASFGVQTP GRMSPRNVEP ISPMSSRISM LAQHEKQHQF  600
RSLSFRELGS NSAAAAAAPS ANSWSKWDSP NGKLDWAVSA DELGKLRRSS SFELGNNGEE  660
PDLSWVQSLV KESPNETKEK SSTAVSSVAA AGSSGEGSNM NTQMESVDHA VLGTWLEQMQ  720
LDHLVAQQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17582GRRKGSKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.78940.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4275530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027350690.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_027350691.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_027350692.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_027350693.10.0zinc finger CCCH domain-containing protein 30-like
RefseqXP_027350694.10.0zinc finger CCCH domain-containing protein 30-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A1S2XTT00.0A0A1S2XTT0_CICAR; zinc finger CCCH domain-containing protein 30
STRINGXP_004493518.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17323395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]