PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4251280.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family FAR1
Protein Properties Length: 622aa    MW: 71653.1 Da    PI: 6.7079
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4251280.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.71.9e-1363147290
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                      +Y+++A ++GF++++++s+k  r+g+++  +++C+    ++    + +  r+t +  + +C+ak++  ++kdg+++v+++ l HnHel+
  Lj1g3v4251280.1  63 YYKNFADRLGFRIKIRTSRKG-RDGRVKYIRLQCTGAAGDRGG--N-KGVRNTCSYMKPNCDAKITAMLSKDGTFRVNTVTLSHNHELS 147
                      9****************9998.8888********865444444..4.45799999********************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1063147IPR004330FAR1 DNA binding domain
PfamPF105511.7E-32247340IPR018289MULE transposase domain
PROSITE profilePS5096610.843530568IPR007527Zinc finger, SWIM-type
PfamPF044342.0E-5542565IPR007527Zinc finger, SWIM-type
SMARTSM005752.1E-5543570IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
MGDDCDTDSH APLDIDSSGC HENFIPHSLE ECKAEILSFD ENDDVDVPQP GMIFSSVDEV  60
RSYYKNFADR LGFRIKIRTS RKGRDGRVKY IRLQCTGAAG DRGGNKGVRN TCSYMKPNCD  120
AKITAMLSKD GTFRVNTVTL SHNHELSSHG ILKSIDMRGK KILGQMKVDM CVKMTSSQND  180
SGNYPKKIRH LIGENGDSES LQKYLVRMQK QDSNFFYTVD VDDFFTVRNV FWADGRSRAA  240
YESFGDVLTV DTTYLFNQYK MPLATLVGVN HHGQSVLFGC ALLSSEDSES FVWLFQSLLH  300
CMSGVPPQGI ITDHSEAMKK AIETVLPSTR HRWCLSYIMK KLPQKLLGYA QYESIRHHLQ  360
NVVYDAVVID EFERNWKKIV EDFGLEDNEW LNELFLERHH WVPSFVRSNF WAGMSVNLHN  420
ESMHAFFDGY VNQHTTLLQF IDQYDNALQY KAEQEYVADV HSSCSTQSCI THSLIERQFQ  480
SAYTNAKFQE VQDEFGGKGD CNVSVDRVDG SVCHYKVIED RIIGDMPREY VVEVTYDRVN  540
CDVKCDCRLF EFRGILCRHS LAILSQERVK EVPDRYVLDR WRKNMRRKYV YVKTSYCVQH  600
LKPQMERLEL LCNQFKSIAV SA
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4251280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006604361.10.0protein FAR1-RELATED SEQUENCE 6
RefseqXP_028217084.10.0protein FAR1-RELATED SEQUENCE 6-like
TrEMBLA0A445FG720.0A0A445FG72_GLYSO; Protein FAR1-RELATED SEQUENCE 6 isoform A
TrEMBLK7MYC00.0K7MYC0_SOYBN; Uncharacterized protein
STRINGGLYMA19G32051.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.19e-99FAR1-related sequence 6