PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v4251280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | FAR1 | ||||||||
Protein Properties | Length: 622aa MW: 71653.1 Da PI: 6.7079 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 42.7 | 1.9e-13 | 63 | 147 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +Y+++A ++GF++++++s+k r+g+++ +++C+ ++ + + r+t + + +C+ak++ ++kdg+++v+++ l HnHel+ Lj1g3v4251280.1 63 YYKNFADRLGFRIKIRTSRKG-RDGRVKYIRLQCTGAAGDRGG--N-KGVRNTCSYMKPNCDAKITAMLSKDGTFRVNTVTLSHNHELS 147 9****************9998.8888********865444444..4.45799999********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-10 | 63 | 147 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.7E-32 | 247 | 340 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.843 | 530 | 568 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 2.0E-5 | 542 | 565 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 2.1E-5 | 543 | 570 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 622 aa Download sequence Send to blast |
MGDDCDTDSH APLDIDSSGC HENFIPHSLE ECKAEILSFD ENDDVDVPQP GMIFSSVDEV 60 RSYYKNFADR LGFRIKIRTS RKGRDGRVKY IRLQCTGAAG DRGGNKGVRN TCSYMKPNCD 120 AKITAMLSKD GTFRVNTVTL SHNHELSSHG ILKSIDMRGK KILGQMKVDM CVKMTSSQND 180 SGNYPKKIRH LIGENGDSES LQKYLVRMQK QDSNFFYTVD VDDFFTVRNV FWADGRSRAA 240 YESFGDVLTV DTTYLFNQYK MPLATLVGVN HHGQSVLFGC ALLSSEDSES FVWLFQSLLH 300 CMSGVPPQGI ITDHSEAMKK AIETVLPSTR HRWCLSYIMK KLPQKLLGYA QYESIRHHLQ 360 NVVYDAVVID EFERNWKKIV EDFGLEDNEW LNELFLERHH WVPSFVRSNF WAGMSVNLHN 420 ESMHAFFDGY VNQHTTLLQF IDQYDNALQY KAEQEYVADV HSSCSTQSCI THSLIERQFQ 480 SAYTNAKFQE VQDEFGGKGD CNVSVDRVDG SVCHYKVIED RIIGDMPREY VVEVTYDRVN 540 CDVKCDCRLF EFRGILCRHS LAILSQERVK EVPDRYVLDR WRKNMRRKYV YVKTSYCVQH 600 LKPQMERLEL LCNQFKSIAV SA |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v4251280.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006604361.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_028217084.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6-like | ||||
TrEMBL | A0A445FG72 | 0.0 | A0A445FG72_GLYSO; Protein FAR1-RELATED SEQUENCE 6 isoform A | ||||
TrEMBL | K7MYC0 | 0.0 | K7MYC0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA19G32051.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF21 | 14 | 477 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52520.1 | 9e-99 | FAR1-related sequence 6 |