PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4139540.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 152aa    MW: 17545.1 Da    PI: 10.2022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4139540.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.33.5e-082165345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                      WT e+ e++  av  + ++   +W ++a++++ g+t  +++ ++ 
  Lj1g3v4139540.2 21 EWTREDNEKFESAVSIYDKDtpdRWLKVAAMIP-GKTVFDVIKKFK 65
                     7********************************.****99999886 PP
2Myb_DNA-binding39.99.9e-1398142347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+  ++ + +++G g+W+ Iar + +++t+ q+ s+ +ky
  Lj1g3v4139540.2  98 PWTEEEHRGFLMGLQKYGIGDWRNIARNFVLTKTPTQVASHARKY 142
                      8******************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512937.4461769IPR017884SANT domain
SMARTSM007172.1E-81870IPR001005SANT/Myb domain
SuperFamilySSF466894.74E-112069IPR009057Homeodomain-like
PfamPF002491.0E-62166IPR001005SANT/Myb domain
CDDcd001677.90E-72167No hitNo description
PROSITE profilePS5129418.50791147IPR017930Myb domain
SuperFamilySSF466892.0E-1592147IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-1594146IPR006447Myb domain, plants
SMARTSM007171.5E-1095145IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-1295145IPR009057Homeodomain-like
PfamPF002496.9E-1098142IPR001005SANT/Myb domain
CDDcd001673.32E-998142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MDLKTFYSNS NYFVQKSAPT EWTREDNEKF ESAVSIYDKD TPDRWLKVAA MIPGKTVFDV  60
IKKFKELEDI LGIEAGHVPI PATVRVRGPN HVRKKGVPWT EEEHRGFLMG LQKYGIGDWR  120
NIARNFVLTK TPTQVASHAR KYYKKQKVSG DK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.172470.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4139540.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1437440.0BT143744.1 Lotus japonicus clone JCVI-FLLj-17N19 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006574483.11e-73MYB transcription factor MYB83 isoform X1
SwissprotQ8S9H73e-47DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLI3STE61e-109I3STE6_LOTJA; Uncharacterized protein
STRINGGLYMA02G42140.35e-73(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-59MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]