PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4139540.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 290aa    MW: 33051.3 Da    PI: 8.0938
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4139540.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.57.4e-14128172347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+++++ +  ++G+g+W+ Iar +  ++t+ q+ s+ qky
  Lj1g3v4139540.1 128 PWTEEEHKRFLMGLLKYGKGDWRNIARNFVMTKTPTQVASHAQKY 172
                      8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512938.9032378IPR017884SANT domain
SMARTSM007171.2E-72476IPR001005SANT/Myb domain
SuperFamilySSF466893.68E-102677IPR009057Homeodomain-like
CDDcd001677.15E-62773No hitNo description
PROSITE profilePS5129419.672121177IPR017930Myb domain
SuperFamilySSF466895.24E-16123177IPR009057Homeodomain-like
TIGRFAMsTIGR015579.7E-17124176IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.606.6E-11125171IPR009057Homeodomain-like
SMARTSM007173.3E-11125175IPR001005SANT/Myb domain
CDDcd001672.90E-9128172No hitNo description
PfamPF002497.8E-12128172IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MDLETLYSPC FMPNSNWFVQ ESAHSTEWSR EDNKRFESAL AIYDKDTPDR WLNVAAMIPG  60
KTVLDVIKQY RELEEDVGEI EAGHVPVPGY HSSSFTFEVV ENQNFDGLKR KPGTTLRGSD  120
HERKKGVPWT EEEHKRFLMG LLKYGKGDWR NIARNFVMTK TPTQVASHAQ KYYIRQKVSG  180
GKDKRRPSIH DITTVNLTET SITSENNKPL SFKSTSNYNS GSLMVFNPNC DDLLMMPSSS  240
DIITSKTLKL QGQDLYDCSL HEAYAKSKIP SFRAAPRNFN KEAVFGIHVL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-18281091191RADIALIS
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4139540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020233753.11e-167transcription factor DIVARICATA isoform X2
SwissprotQ8S9H74e-86DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A151S1M91e-164A0A151S1M9_CAJCA; Myb-like protein J
STRINGGLYMA02G42140.31e-163(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-91MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]