PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v4024040.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 387aa    MW: 43729 Da    PI: 5.1817
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v4024040.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.46.9e-13132176347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       WT +E+  ++++ k++G+g+W tI+r++   +t+ q+ s+ qky
  Lj1g3v4024040.1 132 LWTDDEHRNFLRGLKKYGKGQWQTISREFLPSKTPTQIASHAQKY 176
                      6***************************999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0085152IPR001005SANT/Myb domain
PROSITE profilePS512938.036154IPR017884SANT domain
SuperFamilySSF466892.58E-9353IPR009057Homeodomain-like
PROSITE profilePS5129416.099125181IPR017930Myb domain
SuperFamilySSF466891.45E-15127182IPR009057Homeodomain-like
SMARTSM007171.1E-10129179IPR001005SANT/Myb domain
TIGRFAMsTIGR015576.3E-15129179IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.4E-11129175IPR009057Homeodomain-like
PfamPF002495.6E-10132176IPR001005SANT/Myb domain
CDDcd001676.65E-10133176No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSDSWTPAQD RALELALATV PDDAPDRWEQ IAAAVGRLPA EIMERYRLLV LHVDNIEEGP  60
APDFIVDRVP EPVPNDPSSS QKITKKISPN IEEGPAPDFI VDRVPEPVPN DPSSSQKITK  120
KISPNQNEKR VLWTDDEHRN FLRGLKKYGK GQWQTISREF LPSKTPTQIA SHAQKYYLRL  180
NSTPKRRKRA SIHDLTIDDT DLVPQQNQVP QLNAPMQELS PQQNGVQLDA PMQQVSSQQN  240
QVDALDFPMQ QLSFQQNGDP PLNFPHQVFP QQNCATPLNV QQLSFQQNGD PPLNFPHQVY  300
PQQNCATPLN VQQLSFQQNG DPPLNFPHQV YPQQNCATPL NVQQLSFQQN GHPPLNFPMQ  360
QLQEIQQSGL ASQQHMVPPL DAPMQQL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v4024040.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0061280.0AP006128.1 Lotus japonicus genomic DNA, chromosome 3, clone: LjT36M08, TM0213, complete sequence.
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.14e-39MYB family protein