PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v3992540.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

WOX

Protein Properties

Length: 282aa MW: 30729.3 Da PI: 6.5115

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v3992540.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	48	2.1e-15	33	93	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+++eq+ +Le+ F++ +p ++e ++ k l + +++V++WFqNrR + ++ Lj1g3v3992540.1 33 RSRWTPKPEQILILESIFNSgMVNPPKDETVRIRKLLekfgTVGDANVFYWFQNRRSRSRR 93 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.1	1e-34	32	95	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RWtP+peQi iLe++++sG+++P+k+e+ ri++ Le++G ++d+NVfyWFQNr++R+r++q Lj1g3v3992540.1 32 VRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGTVGDANVFYWFQNRRSRSRRRQ 95 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-8	13	94	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.91E-14	28	100	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.256	29	94	IPR001356	Homeobox domain
SMART	SM00389	8.3E-7	31	98	IPR001356	Homeobox domain
Pfam	PF00046	4.0E-13	33	93	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MEDHQGQKDP NTKNNNAPSP HHGCSSEKSE PVRSRWTPKP EQILILESIF NSGMVNPPKD 60 ETVRIRKLLE KFGTVGDANV FYWFQNRRSR SRRRQRQMQA SLVEQRNNLQ NNNMQQQLLE 120 GAPAAASAIP CDQAQGHPNL AAAISMGFGS SSSPSYLAGS SSSCGVGQQG LDGYFSLSPQ 180 MGYPGIDQSF AASSLVYPPV APNLNYQSGY EGSNVSGYIT VFINGIATEL QGGLIDMKTM 240 FGEDVMLVHS SGVPVPTNEF GFLMQSLQHG ESYILVPKAP QE

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v3992540.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015044	9e-71	AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027351125.1	1e-107	WUSCHEL-related homeobox 11-like
Swissprot	Q8GY25	7e-66	WOX12_ARATH; WUSCHEL-related homeobox 12
TrEMBL	A0A1S3E0C8	1e-104	A0A1S3E0C8_CICAR; WUSCHEL-related homeobox 11 isoform X1
STRING	XP_004493236.1	1e-105	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5898	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G17810.2	4e-35	WUSCHEL related homeobox 12

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768]