PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3978270.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 222aa    MW: 23760.7 Da    PI: 7.8689
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3978270.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260125.52.6e-39441451101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                      +C aCk+lrrkC ++Cv+apyf ++q +++fa+vhk+FGasnv+kll ++p ++r++a++++ yeA+ar++dPvyG+v++il+lqqq+++l+ e
  Lj1g3v3978270.1  44 PCGACKFLRRKCINGCVFAPYFGSDQgAARFAVVHKVFGASNVSKLLLHVPVNRRHEAVATISYEAQARLSDPVYGCVSTILALQQQVASLQGE 137
                      7***********************9989****************************************************************** PP

           DUF260  94 lallkeel 101
                      l++++++l
  Lj1g3v3978270.1 138 LSMVQTQL 145
                      ***99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.96143145IPR004883Lateral organ boundaries, LOB
PfamPF031958.8E-3944142IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:1900150Biological Processregulation of defense response to fungus
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MAEPQVSNSS DHATSSSSGA RRKGTVSKRG GMTITTTTAQ GGAPCGACKF LRRKCINGCV  60
FAPYFGSDQG AARFAVVHKV FGASNVSKLL LHVPVNRRHE AVATISYEAQ ARLSDPVYGC  120
VSTILALQQQ VASLQGELSM VQTQLMNSRF AYASVLQQQQ QPNINVAMHP AYSNNSSAST  180
NIMNMSCFNP AGFDLSMETA APSSHSFEPL QLSHLSHDEE DD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-41371474113LOB family transfactor Ramosa2.1
5ly0_B5e-41371474113LOB family transfactor Ramosa2.1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3978270.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020211040.11e-100LOB domain-containing protein 20
SwissprotQ9SRV32e-72LBD20_ARATH; LOB domain-containing protein 20
TrEMBLA0A151TQF35e-99A0A151TQF3_CAJCA; LOB domain-containing protein 20
STRINGXP_007151760.13e-97(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF77153146
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03760.13e-74LOB domain-containing protein 20