PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3948230.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | NAC | ||||||||
Protein Properties | Length: 397aa MW: 45333.4 Da PI: 6.959 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 186.2 | 7.5e-58 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdee++v+yL++kv+++++++ ++i e+d++k+ePwdLpkk+k +ekewyfF+++d+ky+tg r+nrat+sgyWkatgkdke+++ Lj1g3v3948230.1 16 LPPGFRFHPTDEEIIVYYLTEKVKNSSFSA-TAIGEADLNKCEPWDLPKKAKMGEKEWYFFCQKDRKYPTGMRTNRATESGYWKATGKDKEIFK 108 79**************************99.88***************99999***************************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 kg+lvg+kktLvfy+grapkgekt+Wvmhe+rle Lj1g3v3948230.1 109 GKGNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRLE 143 ********************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.06E-62 | 14 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58.612 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.2E-29 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MEEPIVLNKG DEPLDLPPGF RFHPTDEEII VYYLTEKVKN SSFSATAIGE ADLNKCEPWD 60 LPKKAKMGEK EWYFFCQKDR KYPTGMRTNR ATESGYWKAT GKDKEIFKGK GNLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEF RLEGKFASYS LPKIAKDEWV VSRVFHKSTD VKKSPIPGLL 180 RMNSIGDQHD LLDYSSLPPL MDPSYNKPSS FNEDDFKGTN PISSSSTKSP SDGYYLPSFS 240 INNHHHMIKP EDQRNYEMNT IPTINYTSNL SNPMGNNNNT FSHSQFQKNL LLPDYYVHQN 300 RISGFGNNNN NHDDQAFLRA FASNNHNDYI SVLEKQCKVE QFSSNHSQDT GLSNDRNTTE 360 TSSVVSGRNR ASLYEDLDQG PASVARAFSD LECLWDY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
4dul_A | 3e-53 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 3e-53 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.7060 | 0.0 | cell culture| floral bud| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3948230.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006551 | 0.0 | AP006551.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT35D17, TM0104, complete sequence. | |||
GenBank | AP006552 | 0.0 | AP006552.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28G12, TM0107, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027350151.1 | 0.0 | NAC domain-containing protein 87-like | ||||
Swissprot | Q9FK44 | 1e-113 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | V7CWR8 | 0.0 | V7CWR8_PHAVU; Uncharacterized protein | ||||
STRING | XP_007161814.1 | 0.0 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF409 | 34 | 171 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-114 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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