PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v3948090.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

M-type_MADS

Protein Properties

Length: 506aa MW: 57029.5 Da PI: 4.2243

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v3948090.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	24.4	3.7e-08	9	49	1	41
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifs 41 +ri+n++ r+ f +R++ +lK +E S +C+ e+++ii+ Lj1g3v3948090.1 9 SRISNERERNLAFDRRKKELLKMISEFSEMCGGEACLIIYD 49 59*************************************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	4.9E-4	1	63	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	12.867	1	48	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	2.35E-10	3	86	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	4.9E-9	10	51	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 506 aa Download sequence Send to blast
MVRPKLILSR ISNERERNLA FDRRKKELLK MISEFSEMCG GEACLIIYDG DNIGNAPPVT 60 WPQDPNVVQQ YLIEKYEQAK EKNQTRVKIF DLEEFFETKK HLVESKISNV RKDTFNTNCP 120 IWHQSLNGLG QEQLKNLIVV LDTKIEACDQ SIKMLKEDKL KAAQANFLMM QYLSQNQAIH 180 GYNQLAIASS LFENGEGSSQ SQMLQFDPNP MKMAMNNNGL EEDMTNQFDF PMDCANQTFG 240 ISPNQVLDVP MLISENNWVV VGTNHEALGV PLNCASQINT FGDSTNHLDV PVLMEEDNGN 300 IVDVSYDQHD VHVDCTNQIV HYENSTDDQS DMPVLMENNQ GMMNITTQAD FVSVDGTNST 360 NQLDETIYWS TLIDEAVDGA GLSDEDWANF FDDDEYITDE FCLPEIGTNH ISSSTTSMNG 420 ASSSSYCTDF HVLENPGSSS LCNYDGDAQP RQCFNLVPAL QNIASQTENF HQGADLHSLP 480 PYICRDGTRY LENGAVTSRK RKIMFR

Sequence ? help Back to Top

Protein Sequence Length: 506 aa Download sequence Send to blast

MVRPKLILSR ISNERERNLA FDRRKKELLK MISEFSEMCG GEACLIIYDG DNIGNAPPVT  60
WPQDPNVVQQ YLIEKYEQAK EKNQTRVKIF DLEEFFETKK HLVESKISNV RKDTFNTNCP  120
IWHQSLNGLG QEQLKNLIVV LDTKIEACDQ SIKMLKEDKL KAAQANFLMM QYLSQNQAIH  180
GYNQLAIASS LFENGEGSSQ SQMLQFDPNP MKMAMNNNGL EEDMTNQFDF PMDCANQTFG  240
ISPNQVLDVP MLISENNWVV VGTNHEALGV PLNCASQINT FGDSTNHLDV PVLMEEDNGN  300
IVDVSYDQHD VHVDCTNQIV HYENSTDDQS DMPVLMENNQ GMMNITTQAD FVSVDGTNST  360
NQLDETIYWS TLIDEAVDGA GLSDEDWANF FDDDEYITDE FCLPEIGTNH ISSSTTSMNG  420
ASSSSYCTDF HVLENPGSSS LCNYDGDAQP RQCFNLVPAL QNIASQTENF HQGADLHSLP  480
PYICRDGTRY LENGAVTSRK RKIMFR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v3948090.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006551	0.0	AP006551.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT35D17, TM0104, complete sequence.
GenBank	AP006552	0.0	AP006552.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28G12, TM0107, complete sequence.

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	7e-14	M-type_MADS family protein