PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3847150.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | SBP | ||||||||
Protein Properties | Length: 187aa MW: 21096.7 Da PI: 8.1551 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 134 | 4.8e-42 | 82 | 156 | 2 | 76 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 C v+gC++dls+++eyhrrh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efD+ krsCr+rL++hn+rrrk+ Lj1g3v3847150.2 82 CSVDGCTSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDDVKRSCRKRLDGHNRRRRKP 156 *************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 3.0E-33 | 77 | 143 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 31.71 | 79 | 156 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.79E-39 | 80 | 160 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.1E-31 | 82 | 155 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MDWDWKEFAW DPSGLELAIG GLEGQKNEEA TVDLRLGEGS DSVEKSAPDT PKDPEESKAM 60 SSSPSGSSKR SRLHNGSLNM ACSVDGCTSD LSDCREYHRR HRVCEKHSKT PVVLVGGKQQ 120 RFCQQCSRFH SLGEFDDVKR SCRKRLDGHN RRRRKPPPPS LFMAAEKFMY NYKGLCVASL 180 DSMNFFC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-28 | 82 | 155 | 11 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 138 | 155 | KRSCRKRLDGHNRRRRKP |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.1442 | 0.0 | cell culture| floral bud| flower| pod| protoplast |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3847150.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT144868 | 0.0 | BT144868.1 Lotus japonicus clone JCVI-FLLj-19G4 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027350570.1 | 2e-96 | teosinte glume architecture 1-like isoform X1 | ||||
Refseq | XP_027350571.1 | 2e-96 | teosinte glume architecture 1-like isoform X1 | ||||
Refseq | XP_027350572.1 | 2e-96 | teosinte glume architecture 1-like isoform X1 | ||||
Refseq | XP_027350573.1 | 2e-96 | teosinte glume architecture 1-like isoform X1 | ||||
Refseq | XP_027350574.1 | 2e-96 | teosinte glume architecture 1-like isoform X2 | ||||
TrEMBL | I3SWM0 | 1e-125 | I3SWM0_LOTJA; Uncharacterized protein | ||||
STRING | XP_007161706.1 | 2e-88 | (Phaseolus vulgaris) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 6e-40 | SBP family protein |