PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3847150.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family SBP
Protein Properties Length: 375aa    MW: 41225.1 Da    PI: 7.5392
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3847150.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.11.9e-4182156276
                      -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
              SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                      C v+gC++dls+++eyhrrh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efD+ krsCr+rL++hn+rrrk+
  Lj1g3v3847150.1  82 CSVDGCTSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDDVKRSCRKRLDGHNRRRRKP 156
                      *************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.1E-3277143IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.7179156IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-3880160IPR004333Transcription factor, SBP-box
PfamPF031108.1E-3182155IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 375 aa     Download sequence    Send to blast
MDWDWKEFAW DPSGLELAIG GLEGQKNEEA TVDLRLGEGS DSVEKSAPDT PKDPEESKAM  60
SSSPSGSSKR SRLHNGSLNM ACSVDGCTSD LSDCREYHRR HRVCEKHSKT PVVLVGGKQQ  120
RFCQQCSRFH SLGEFDDVKR SCRKRLDGHN RRRRKPPPPS LFMAAEKFMY NYKGPRILHF  180
GSPQAYANTI MRNMWPTPTK TEAESGYDHH RLLYRIDKHR QDKGHPDLWQ ENVPKAGIGS  240
EAMHGTPISQ PNLGAPNIAP SASGKGNRKL SSDGKPGSFD SGCALYLLST LQSQSPELSL  300
VQSSITCPAQ SPSGSLDFGA VNEYSGLGKA KDKPPGPVFV LDANTTNLHC NGMLQTGPDG  360
LVENEDSLTL PFVWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-27821551184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1138155KRSCRKRLDGHNRRRRKP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.14420.0cell culture| floral bud| flower| pod| protoplast
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3847150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1383870.0BT138387.1 Lotus japonicus clone JCVI-FLLj-23K3 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020228025.10.0squamosa promoter-binding-like protein 16
RefseqXP_020228026.10.0squamosa promoter-binding-like protein 16
RefseqXP_020228027.10.0squamosa promoter-binding-like protein 16
TrEMBLA0A151SPS70.0A0A151SPS7_CAJCA; Squamosa promoter-binding-like protein 16
STRINGGLYMA19G26390.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.12e-41SBP family protein