PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3751720.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB
Protein Properties Length: 276aa    MW: 31941 Da    PI: 6.3131
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3751720.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.14.9e-141461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd +lv+ +   G ++W+ +++  g+ R++k+c++rw +yl
  Lj1g3v3751720.1 14 RGPWTMEEDHKLVNFILNNGIHCWRMVPKLAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding52.98.6e-1767110146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg +T+ E++++++++  lG++ W++Ia++++ gRt++++k++w++
  Lj1g3v3751720.1  67 RGDFTEMEEDQIIQLHSCLGNR-WSKIAAHFP-GRTDNEIKNHWNT 110
                      899*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-21564IPR009057Homeodomain-like
PROSITE profilePS5129413.193961IPR017930Myb domain
SuperFamilySSF466891.8E-2811108IPR009057Homeodomain-like
SMARTSM007173.8E-71363IPR001005SANT/Myb domain
PfamPF002491.5E-111461IPR001005SANT/Myb domain
CDDcd001676.89E-51661No hitNo description
PROSITE profilePS5129425.18862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.3E-2565116IPR009057Homeodomain-like
SMARTSM007173.0E-1566114IPR001005SANT/Myb domain
PfamPF002494.4E-1567110IPR001005SANT/Myb domain
CDDcd001677.34E-1070110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGRKPCCDKI GLKRGPWTME EDHKLVNFIL NNGIHCWRMV PKLAGLLRCG KSCRLRWINY  60
LRPDLKRGDF TEMEEDQIIQ LHSCLGNRWS KIAAHFPGRT DNEIKNHWNT RIKKRLKLLG  120
VDPLTHKPIE LKKQTDEDKN KTNLIIQPDI SKGSEQNVET KLLLDGYGSK EMTKTDEKRE  180
ENKVTWDDTS ELMNNFEMLC SQLDLGSWIS HETNTSANSF SSSSASLDET SHLSMSESTC  240
LQENSLQQWV DNIDSNLSWD GFNPFDQDFF FLGNRE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-28121165108B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00510DAPTransfer from AT5G14340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3751720.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150442e-50AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548543.11e-156myb-related protein 315
RefseqXP_028206935.11e-156myb-related protein 315-like
TrEMBLA0A371HZV21e-157A0A371HZV2_MUCPR; Myb-related protein 315 (Fragment)
STRINGGLYMA16G06900.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66253150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14340.12e-83myb domain protein 40