PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3646480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18162.3 Da PI: 6.2466 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142.6 | 1.2e-44 | 10 | 108 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrrkC +dC++apyfp e+p+kf nvhk+FGasnv+kll+++++++reda++sl+yeAear++dPvyG+vg i+ lq+q+ +l++el Lj1g3v3646480.1 10 PCAACKFLRRKCMPDCIFAPYFPPEEPHKFSNVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLRLQKEL 103 7********************************************************************************************* PP DUF260 95 allke 99 +++++ Lj1g3v3646480.1 104 DATNA 108 99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 28.003 | 9 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 5.1E-44 | 10 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MASSSYSNSP CAACKFLRRK CMPDCIFAPY FPPEEPHKFS NVHKIFGASN VSKLLNEVQP 60 HQREDAVNSL AYEAEARIKD PVYGCVGAIS VLQRQVLRLQ KELDATNADL IRFTCSEMET 120 TQDGRRIGEG GGSSLGQSPG FYYPYAWNND PLGDGFQRGG DNNM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-65 | 7 | 118 | 8 | 119 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-65 | 7 | 118 | 8 | 119 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3646480.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029130687.1 | 1e-108 | LOB domain-containing protein 25 isoform X1 | ||||
Swissprot | Q8L8Q3 | 4e-68 | LBD25_ARATH; LOB domain-containing protein 25 | ||||
TrEMBL | A0A151RUI3 | 1e-107 | A0A151RUI3_CAJCA; LOB domain-containing protein 25 | ||||
STRING | XP_007140818.1 | 1e-107 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1091 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G27650.1 | 2e-70 | LOB domain-containing protein 25 |
Publications ? help Back to Top | |||
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