PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3443950.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 267aa MW: 29563 Da PI: 9.1106 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 103.5 | 1.1e-32 | 83 | 139 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYYrCt ++C++kk+vers+edp++++itYeg H h Lj1g3v3443950.1 83 DDGYKWRKYGQKSIKNSPNPRSYYRCTNPRCSAKKQVERSNEDPETLIITYEGLHLH 139 8******************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 27.393 | 77 | 142 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.85E-27 | 80 | 139 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 5.6E-30 | 80 | 139 | IPR003657 | WRKY domain |
SMART | SM00774 | 8.7E-36 | 82 | 141 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.0E-26 | 83 | 139 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MQPEPNNTII RAVSRDQAFN YRFISNIYSG PTISDIENAL SVTTNKTEHF SASARVSILE 60 RNLSKIENKY TLKIKCFGNG MGDDGYKWRK YGQKSIKNSP NPRSYYRCTN PRCSAKKQVE 120 RSNEDPETLI ITYEGLHLHF AYPCFLVGQP QQSQSHPPVK KSKFTSSQVQ AQAQAQDFIV 180 NEAQASASVG LTSPTLLNSP QDMAQQNLGS QGLLEDMVPF MVRNPSNNLN SGYSKLSCSA 240 DPSPTSPPLW TSGHSTSFHT VGLNSTT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-21 | 83 | 139 | 15 | 71 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.7765 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3443950.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP006103 | 0.0 | AP006103.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT11J24, TM0185, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028240309.1 | 1e-135 | probable WRKY transcription factor 49 isoform X2 | ||||
Swissprot | Q9FHR7 | 4e-48 | WRK49_ARATH; Probable WRKY transcription factor 49 | ||||
TrEMBL | A0A445JWC0 | 1e-134 | A0A445JWC0_GLYSO; Putative WRKY transcription factor 49 | ||||
STRING | GLYMA07G16040.2 | 1e-134 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7118 | 34 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43290.1 | 2e-48 | WRKY DNA-binding protein 49 |