PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v3384730.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WOX | ||||||||
Protein Properties | Length: 218aa MW: 24528.8 Da PI: 5.952 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 68.3 | 1e-21 | 78 | 138 | 2 | 57 |
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+t+t+ ql+ Le+ F + n +ps+++++e+A +l +++e++V++WFqNrRa+ k+ Lj1g3v3384730.1 78 RQRWTPTPLQLQMLEQIFDQgNGTPSKQKIKEIAIELgqhgQISETNVYNWFQNRRARSKR 138 89*****************99**************************************97 PP | |||||||
2 | Wus_type_Homeobox | 98.1 | 7e-32 | 77 | 140 | 2 | 65 |
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RWtPtp Q+++Le+++++G tP+k++i++i+ eL ++G+i+++NV++WFQNr+aR+++kq Lj1g3v3384730.1 77 ARQRWTPTPLQLQMLEQIFDQGNGTPSKQKIKEIAIELGQHGQISETNVYNWFQNRRARSKRKQ 140 789***********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 74 | 140 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.354 | 74 | 139 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.7E-16 | 76 | 143 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.07E-19 | 77 | 140 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.97E-16 | 78 | 140 | No hit | No description |
Pfam | PF00046 | 1.8E-19 | 78 | 138 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 218 aa Download sequence Send to blast |
MEGEQHDISN GGGLYVKVMT DEQMELLRQQ ISVYATICDS LVEMHKAITT QQDLAGLRLG 60 NLYCDPLMVC SGHKITARQR WTPTPLQLQM LEQIFDQGNG TPSKQKIKEI AIELGQHGQI 120 SETNVYNWFQ NRRARSKRKQ LAPTTPSHAE LEAAETEAVE SPKEKRISAA ESVQVLQPYE 180 NSSSPHRLKD FYIQSPDIGF EQLLGKIEAG GCFSSYFL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 131 | 139 | RRARSKRKQ |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.21976 | 0.0 | cell culture |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor which may be involved in developmental processes. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v3384730.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT142921 | 0.0 | BT142921.1 Lotus japonicus clone JCVI-FLLj-5M11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014500511.1 | 1e-125 | WUSCHEL-related homeobox 13 | ||||
Swissprot | Q5QMM3 | 7e-77 | WOX8_ORYSJ; WUSCHEL-related homeobox 8 | ||||
TrEMBL | I3SR23 | 1e-145 | I3SR23_LOTJA; Uncharacterized protein | ||||
STRING | XP_007136031.1 | 1e-124 | (Phaseolus vulgaris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1855 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35550.1 | 2e-70 | WUSCHEL related homeobox 13 |
Publications ? help Back to Top | |||
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