PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3381340.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bZIP
Protein Properties Length: 147aa    MW: 16455.5 Da    PI: 6.8074
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3381340.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_144.53.3e-143078553
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1  5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelk 53
                     ++ +r+++NRe+ArrsR RK++ ++eL+  v++L +eN+++   l+  +
  Lj1g3v3381340.1 30 RKRKRMISNRESARRSRMRKQKHLDELAAQVAQLRSENQQMLTSLNLTT 78
                     6789************************************998887665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.6E-112076No hitNo description
SMARTSM003389.1E-182690IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.6572891IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-123081No hitNo description
PfamPF001702.3E-113075IPR004827Basic-leucine zipper domain
CDDcd147022.92E-203182No hitNo description
PROSITE patternPS0003603348IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MASSSGTSSG SSMIQNSGSE EELQALMDQR KRKRMISNRE SARRSRMRKQ KHLDELAAQV  60
AQLRSENQQM LTSLNLTTQR FMIIDAENSV LSAQMGELSH RLESLNEIID FVNATNGVFA  120
ANSFVDPIPS AYYLNHPIMA SADILQY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12950RKRKRMISNRESARRSRMRKQK
24249RRSRMRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.54914e-84floral bud| flower| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the micropylar endosperm and radicle tip in early germinating seeds. {ECO:0000269|PubMed:23461773}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the DNA G-box motif 5'-CACGTG-3' of MAN7 promoter. Involved in the positive regulation of seed germination through MAN7 gene activation. MAN7 is required for both, loosening of the micropylar endosperm, and rupture of the seed coat in germinating seeds. {ECO:0000269|PubMed:23461773}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3381340.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0049420.0AP004942.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43P05, TM0113, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027355431.11e-66bZIP transcription factor 11-like
SwissprotC0Z2L52e-42BZP44_ARATH; bZIP transcription factor 44
TrEMBLA0A445HKP64e-64A0A445HKP6_GLYSO; BZIP transcription factor 44
TrEMBLQ0GPF84e-64Q0GPF8_SOYBN; BZIP transcription factor
STRINGGLYMA12G04440.16e-65(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF61334147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34590.11e-43G-box binding factor 6
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  2. Pedrotti L, et al.
    Snf1-RELATED KINASE1-Controlled C/S1-bZIP Signaling Activates Alternative Mitochondrial Metabolic Pathways to Ensure Plant Survival in Extended Darkness.
    Plant Cell, 2018. 30(2): p. 495-509
    [PMID:29348240]