PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3317390.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family LBD
Protein Properties Length: 316aa    MW: 34117.4 Da    PI: 8.6497
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3317390.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601002.2e-314107199
           DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                      +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l+++ pe+ r+++++sl+yeA+ r+ +P+yG+vg+++++++ql+q
  Lj1g3v3317390.1   4 SCNGCRVLRKGCSENCSIRPCLqwiksPESQANATVFLAKFYGRAGLMNLVNSGPEHLRPAIFRSLLYEACGRIVNPIYGSVGLLWSGSWQLCQ 97 
                      6********************************************************************************************* PP

           DUF260  90 lkaelallke 99 
                      +++e++l ++
  Lj1g3v3317390.1  98 AAVEAVLKGA 107
                      ****998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381551.6E-981314IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089117.1253109IPR004883Lateral organ boundaries, LOB
PfamPF031955.7E-254102IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLQWIKS PESQANATVF LAKFYGRAGL MNLVNSGPEH  60
LRPAIFRSLL YEACGRIVNP IYGSVGLLWS GSWQLCQAAV EAVLKGAPIT PITSEAAASG  120
RGPPLKAYDI RHVSRDENSA ASNETQQQRV KTRSRVKRSV AKLKPAGEEK NGGKRAESCS  180
AEPVEEARGG AGRVGWTGEV LNRSGSHDHE SSLSHQSEAA NAAAEGESKE SESIVSVETA  240
ENSVLFRNEP ESNRKRVDRT GESSEDHVGL ELTLGFEPAR VHHVVPVKKR RIELKGFGGS  300
AENGSCKMEL GLQLPA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.70120.0cell culture| flower| pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269|PubMed:12068116}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3317390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096600.0AP009660.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT23D08, TM0220, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027929983.11e-171LOB domain-containing protein 41-like
SwissprotQ9M8861e-106LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A4D6NIY21e-170A0A4D6NIY2_VIGUN; Uncharacterized protein
STRINGXP_007139150.11e-168(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15463499
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-88LOB domain-containing protein 41