PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3220250.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Dof
Protein Properties Length: 308aa    MW: 33505.6 Da    PI: 9.4461
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3220250.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.92.6e-391373262
           zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                     ++++lkcprC+stntkfCyynny+lsqPr+fCk+CrryWt+GGalrnvPvGgg+r+nk+s+
  Lj1g3v3220250.1 13 PDATLKCPRCESTNTKFCYYNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRSK 73
                     68899*****************************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-32171IPR003851Zinc finger, Dof-type
PfamPF027014.7E-331571IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.861771IPR003851Zinc finger, Dof-type
PROSITE patternPS0136101955IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MADRARLAKI HQPDATLKCP RCESTNTKFC YYNNYNLSQP RHFCKTCRRY WTRGGALRNV  60
PVGGGCRRNK RSKGNNSKSP MKSDHRQGAN NGSSSTSANS SSNGISTNAM VGHLQTQTPT  120
TQFPFLASLQ HYNSDYVSGN IGSHFGTRNG NGTSSGSDIG EFQIGVGSSS GNNGGSLLSP  180
NGLGEQWRLP NLQQIHHQHQ SQQQQQQHHQ FPFLTNVEPQ IGLFQFGGEN NADHGGRFNS  240
SKAIDSSSVS GMVMPQHDNT VKVEGNEGLN LPKNLLSISG NDPFWNNGSG NAWSEEAPSF  300
APSPNHYL
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3220250.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020231937.11e-123dof zinc finger protein DOF2.4
TrEMBLA0A371HYY91e-127A0A371HYY9_MUCPR; Dof zinc finger protein DOF2.4 (Fragment)
STRINGGLYMA02G10250.21e-110(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65634143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.13e-41DNA binding with one finger 2.4