PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3116640.2
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 331aa    MW: 37586.6 Da    PI: 8.3569
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3116640.2genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP151.55.4e-471112522136
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.......eaesssssas....n 84 
                      ++kkdrhskihT++g+RdRRvRls+e+a++fFdLqd+LGfdk+s+t+eWL+ ++++ai el +++ s+++++          +    ++    +
  Lj1g3v3116640.2 111 PAKKDRHSKIHTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLEWLFSKSNKAIEELFRSKHSDNNNStgacaadG--DGD--GDddsfS 200
                      68**************************************************************6666655544435331..211..1111212 PP

              TCP  85 sssgkaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136
                      sss++ +  + k+ +++k+++ +++++kesr+karararert++km+ ++++
  Lj1g3v3116640.2 201 SSSSEDEVVSVKRAQKEKEPSGVQAKMKESREKARARARERTSNKMCPETEN 252
                      22235555556899999999999************************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-41112247IPR005333Transcription factor, TCP
PROSITE profilePS5136934.783113171IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.607228245IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MFPNSSYPYP YFPSSSSSSP SPYPPFNFLN PGNASTNNIF LHDPPPLPSV PYTNNTTNTH  60
HHHAPPTCSE TFTNWALADA MLKQENLTGG PHHHYNLSNF LTRKLPAAKK PAKKDRHSKI  120
HTSQGLRDRR VRLSIEIARK FFDLQDMLGF DKASNTLEWL FSKSNKAIEE LFRSKHSDNN  180
NSTGACAADG DGDGDDDSFS SSSSEDEVVS VKRAQKEKEP SGVQAKMKES REKARARARE  240
RTSNKMCPET ENPQMQLHQF SSEFQPHQEL HRDDDFKVFE ESIVIKRKLK QSLMSSSHHH  300
QNQNIGIPKE ASFNNNNNRL QIFGKSWEEC T
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00215DAPTransfer from AT1G67260Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3116640.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0096280.0AP009628.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjB10L14, BM1697, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019455252.12e-85PREDICTED: transcription factor DICHOTOMA-like
TrEMBLQ1WK580.0Q1WK58_LOTJA; CYC1
STRINGGLYMA08G28691.13e-82(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.29e-27TCP family protein
Publications ? help Back to Top
  1. Feng X, et al.
    Control of petal shape and floral zygomorphy in Lotus japonicus.
    Proc. Natl. Acad. Sci. U.S.A., 2006. 103(13): p. 4970-5
    [PMID:16549774]