PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v3024170.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family TCP
Protein Properties Length: 376aa    MW: 42056.7 Da    PI: 8.4567
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v3024170.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP106.93.2e-33591862115
              TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt................ssssasec..eaes 77 
                       g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl+ akpai+el+ +                s          +++
  Lj1g3v3024170.1  59 FGGKDRHSKVCTIRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLNVAKPAIDELPPLpnfpqpgnftfsgypsS------LitPHHH 146
                      689*************************************************************87777777666533330......1333333 PP

              TCP  78 ssssasnsssg.............kaaksaakskksqksaasalnlakesr 115
                      + ++as+s+++             +           + s+++  n++++ +
  Lj1g3v3024170.1 147 EANTASQSNEQlqfheregtsvrgQ-----------KMSKEQLFNINRSGN 186
                      3333333333333322223333331...........222222233333222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036348.3E-3161200IPR005333Transcription factor, TCP
PROSITE profilePS5136931.96461119IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MRDTQDDYKI PKEADNIPLK LEGHSSDDHE KPKPPSASTS PAQWSRLKDP RIVRVSRAFG  60
GKDRHSKVCT IRGLRDRRVR LSVPTAIQLY DLQDRLGLNQ PSKVVDWLLN VAKPAIDELP  120
PLPNFPQPGN FTFSGYPSSL ITPHHHEANT ASQSNEQLQF HEREGTSVRG QKMSKEQLFN  180
INRSGNVDQW EGSSQNSMWK LKAKEVSEEL VTDKENWMNK QGSNNNEGGS AHVLPNNLQR  240
ANHYPSFLGL LNNMPLGYAY NQWENSGGVN SQLGGNHGFS NQTNISVVPF PSTLALSTGN  300
SQISQSYIPS HVTAMDVDQR QINHYQMLSL SSQNLLVNNS LNPSFSLAMM TPRLLHSPNS  360
NENPSSSHRD QDFTSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-1866120155Putative transcription factor PCF6
5zkt_B3e-1866120155Putative transcription factor PCF6
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.87851e-165floral bud| pod
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v3024170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027349881.11e-130transcription factor TCP13-like
TrEMBLA0A371E1X11e-139A0A371E1X1_MUCPR; Transcription factor TCP13 (Fragment)
STRINGGLYMA18G50371.11e-128(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93234119
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.14e-45plastid transcription factor 1