PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2979260.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | MYB | ||||||||
Protein Properties | Length: 244aa MW: 27503.9 Da PI: 9.0176 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 53.6 | 5.1e-17 | 33 | 80 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed+ll+ +v+ +G g W++++++ g++R++k+c++rw++yl Lj1g3v2979260.1 33 KGSWTKVEDDLLKACVQHYGEGKWHLVPQRAGLNRCRKSCRLRWLNYL 80 799*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.8 | 1.6e-15 | 86 | 131 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg ++++E +l ++++k+lG++ W++Ia +++ gRt +++k++w++y+ Lj1g3v2979260.1 86 RGDFSEDEVDLMIRLHKLLGNR-WSLIAGRLP-GRTSNDVKNYWNTYM 131 899*******************.*********.*************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 16.385 | 28 | 80 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.1E-22 | 29 | 83 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.4E-28 | 30 | 127 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.5E-14 | 32 | 82 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 8.8E-16 | 33 | 80 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.49E-10 | 35 | 80 | No hit | No description |
PROSITE profile | PS51294 | 23.879 | 81 | 135 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.0E-22 | 84 | 133 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.5E-14 | 85 | 133 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.8E-14 | 86 | 130 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.44E-10 | 89 | 131 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MGKGSSNEVS DLSFTNSFAT SHQKEGSPAG VRKGSWTKVE DDLLKACVQH YGEGKWHLVP 60 QRAGLNRCRK SCRLRWLNYL RPNIKRGDFS EDEVDLMIRL HKLLGNRWSL IAGRLPGRTS 120 NDVKNYWNTY MRSRAQCSYS KKDKNLKPHQ VIKPVPRTFS KPKPKPSSDH HSNSEVNVSS 180 QLVAACAASS SGSTNWWETL LDDMGDDNTI ALDEELVASI TTNACDFLTE SDQTWSDFLL 240 NVKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 2e-23 | 33 | 135 | 4 | 105 | MYB PROTO-ONCOGENE PROTEIN |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00213 | DAP | Transfer from AT1G66370 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2979260.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004962 | 7e-31 | AP004962.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT28H14, TM0141, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027351421.1 | 1e-100 | transcription factor MYB90-like | ||||
Swissprot | Q9FNV9 | 1e-60 | MY113_ARATH; Transcription factor MYB113 | ||||
TrEMBL | A0A445J565 | 1e-91 | A0A445J565_GLYSO; Transcription factor MYB113 | ||||
TrEMBL | K7LFP2 | 1e-91 | K7LFP2_SOYBN; MYB transcription factor | ||||
STRING | GLYMA09G36983.1 | 2e-92 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G66370.1 | 6e-63 | myb domain protein 113 |
Publications ? help Back to Top | |||
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