PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2953600.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 529aa    MW: 58147.1 Da    PI: 7.9909
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2953600.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.43.8e-30211270159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a  Cpv+k+v+r+a+d +++++tYeg+Hnh+
  Lj1g3v2953600.1 211 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApACPVRKQVQRCADDLSILITTYEGTHNHP 270
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.1E-31196272IPR003657WRKY domain
SuperFamilySSF1182903.01E-27204272IPR003657WRKY domain
PROSITE profilePS5081128.392206272IPR003657WRKY domain
SMARTSM007743.5E-36211271IPR003657WRKY domain
PfamPF031067.0E-27212270IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MSKNSSPSGS EIEEKRVTSV FLDDGFSNQE VKKVERLKSA KAEMGEVKEE NERLKMMLNQ  60
VEKDYHSLQL RFFDILHKEV SNKGVAENSP TPHDHENEEP ELVSLCLGRG PRESKKGAII  120
EKLNQPREKE DVEVNLSLGL ESKYLLSMEV VSDLSPVNSS EELPKEVELA EGTLKTNKSA  180
KVVNVNDDIS DQMPAKKARV SVRARCDTPT MNDGCQWRKY GQKIAKGNPC PRAYYRCTVA  240
PACPVRKQVQ RCADDLSILI TTYEGTHNHP LPVSAAAIAS TTSAAASMLL SGSSTSHHAG  300
YTSALSGLSF NQQFGEQRAK HAFLPPNQAS HLFPTVTVDL TSSNNMASSN QRFSPNSLSF  360
CSPHEPNFTH SNVWGNKGFP NNGTLRPLNH FQEHNFYHQQ CMTTNQTSNS LAETITKAIS  420
TDPSLHSVIA AAVSSLVGPS GNQKPGLNLK LGQHHDHQLV SSNLLNQNNG KGCINGYFKR  480
LTSANSQARN FMLLKPTLPF SVSNSSTGTS PSIVNQIKHN YDPDMNTHH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A9e-21198272174WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.183140.0root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2953600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0064250.0AP006425.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT39B10, TM0315, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004489160.10.0probable WRKY transcription factor 72
SwissprotQ9LXG88e-95WRK72_ARATH; Probable WRKY transcription factor 72
TrEMBLA0A1S2XGT80.0A0A1S2XGT8_CICAR; probable WRKY transcription factor 72
STRINGXP_004489160.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65034134
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-88WRKY DNA-binding protein 72