PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2883900.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family bHLH
Protein Properties Length: 338aa    MW: 38273 Da    PI: 5.9345
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2883900.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.61.3e-09164210455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       h ++Er+RR+++ + +  L   +P +     kK +K+ +L++A++Y k+Lq
  Lj1g3v2883900.1 164 HHIMAERKRRKELTQNIIALSATIPGL-----KKTDKVYVLREAINYTKQLQ 210
                      599************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.19E-8155214No hitNo description
PROSITE profilePS5088813.236160209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.14E-14164224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-14164222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.2E-7165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-8166215IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MAHLLENLVS HMEMDDDIFN QSDNSFDEQG FLREILQLPD FSPQSDETSS PCPYFKIQNN  60
ISVDGVTSPP NSISTLSLEE TGFERNDPLH KSHSSNSIMS LENNLNSPTT YLLSFDKSSV  120
EQITHESSPD HNSVLRSNNR TRGSELTPGM HQATKKVRRS GTPHHIMAER KRRKELTQNI  180
IALSATIPGL KKTDKVYVLR EAINYTKQLQ ERVKELENQN RDKNVDSATF TMKSQDSSNK  240
STTYCETNRE SLPIGVKARV LEKEVNVGIH CEKQKDIVHN IYVLLEKIHL SVTCSSVLPF  300
GTSLIINIIA QMDDEYNMSI DELVKNLKEY MLEACGVQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1169174RKRRKE
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2883900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027353406.11e-119transcription factor bHLH18-like
TrEMBLA0A1S2XQD25e-99A0A1S2XQD2_CICAR; transcription factor bHLH18-like isoform X1
STRINGXP_004492885.11e-100(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF149471112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-38bHLH family protein