PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2809170.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family C3H
Protein Properties Length: 410aa    MW: 44853.4 Da    PI: 8.0144
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2809170.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.4e-113460127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                     ++++ C+++ rtG C++G++C+F+H+p
  Lj1g3v2809170.1 34 PGEPDCSYYIRTGLCRFGATCRFNHPP 60
                     5789*********************97 PP
2zf-CCCH38.52e-1281105327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C+++++tGtCk+G++C+F+H++
  Lj1g3v2809170.1  81 QPECQYYLKTGTCKFGATCRFHHPK 105
                      799********************96 PP
3zf-CCCH35.51.6e-11127151327
                      S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                      +++C +++rtG+Ck+G++CkF+H++
  Lj1g3v2809170.1 127 EPECAYYFRTGQCKFGNTCKFHHPQ 151
                      799********************97 PP
4zf-CCCH382.8e-12282308127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      +++++C+f+++tG Ck+G+ C+F+H++
  Lj1g3v2809170.1 282 PGQPECQFYMKTGDCKFGAVCRFHHPR 308
                      5789*********************96 PP
5zf-CCCH38.22.4e-12328354127
                      --S---SGGGGTS--TTTTT-SS-SSS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                      ++++lC f++r+G+Ck+G++CkF H++
  Lj1g3v2809170.1 328 PGEPLCVFYSRYGICKFGPSCKFDHPM 354
                      589**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-43360IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9763461IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-83560IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-53861IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.5E-43959IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-678105IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.23478106IPR000571Zinc finger, CCCH-type
PfamPF006429.5E-1081105IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-682107IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-484104IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4124151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.765124152IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.4E-6127152IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-9127151IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596281309IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6281308IPR000571Zinc finger, CCCH-type
PfamPF006428.7E-9283308IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.88E-5285309IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-4287309IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-7327354IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.821327355IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9329354IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5330354IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4332352IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MEFHAAISMS QDAMWQMSLR SSETMDSGPY PEHPGEPDCS YYIRTGLCRF GATCRFNHPP  60
NRRLAIAAAR MKGEFPERIG QPECQYYLKT GTCKFGATCR FHHPKDKAGI AGRVALNILG  120
YPLRPNEPEC AYYFRTGQCK FGNTCKFHHP QPSNMVLSMQ SSAVYPTVQS PTTPGQQSYA  180
AGITNWSSSS YIPSPRWQGP SSYAPLILPQ GVVSVPGWSA YNGQMGPDSP QQTMGNDQAY  240
GTSRQGDPEN TGSQGAYSQF RSGSVPVGFY ALEGENIFPE RPGQPECQFY MKTGDCKFGA  300
VCRFHHPRER AIPAPDCILS PLGLPLRPGE PLCVFYSRYG ICKFGPSCKF DHPMGIFAYN  360
ISAPPSADAS GRRLLGSSSS GTAALNLSSE EPRRVSISET RHVPSGDDEG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.3000.0floral bud| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2809170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6241380.0EU624138.1 Medicago sativa zinc finger protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534518.10.0zinc finger CCCH domain-containing protein ZFN-like isoform X2
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLI1L6B10.0I1L6B1_SOYBN; Uncharacterized protein
STRINGGLYMA09G38650.30.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.11e-164zinc finger protein 1