PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2776620.3
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family WRKY
Protein Properties Length: 340aa    MW: 36420.1 Da    PI: 5.2611
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2776620.3genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.15.7e-31162220259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+
  Lj1g3v2776620.3 162 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPTMFIVTYTAEHNHP 220
                      79*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-30155222IPR003657WRKY domain
PROSITE profilePS5081134.876156222IPR003657WRKY domain
SuperFamilySSF1182904.05E-26159222IPR003657WRKY domain
SMARTSM007749.3E-37161221IPR003657WRKY domain
PfamPF031069.6E-26163220IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010150Biological Processleaf senescence
GO:0010200Biological Processresponse to chitin
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MEEDWDLHAV VRGCTSTATT TTTTASAPAA SSSVSSSSVF TTCCLQKPEL SSSSGFSILE  60
GEQVLSFPAV AYPFESRDSI EELHELCKPF FSKSLQASSP LSSFSFSSSA APKSQDKQQQ  120
RSKQPHHGGS GSGSGSATTP RSKRRKTQLK KVCQVPVENL ASDVWAWRKY GQKPIKGSPY  180
PRGYYRCSSS KGCLARKQVE RNRSDPTMFI VTYTAEHNHP APTHRNSLAG STRQKPLTPE  240
TAAAAGDSDK VVTKPTSPAT SGGEAEEGVP SQGEKSESRE DLMMDDEEGE DEFFGLSDMV  300
LTDDFFESLD DELSQITGSS DPFSAIAIPT WVAANGAGGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B3e-22147223380Disease resistance protein RRS1
5w3x_D3e-22147223380Disease resistance protein RRS1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.133840.0root
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00422DAPTransfer from AT4G01250Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2776620.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932952e-93BT093295.1 Soybean clone JCVI-FLGm-17I1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237508.21e-131WRKY transcription factor 10
RefseqXP_028215575.11e-131WRKY transcription factor 22-like
TrEMBLA0A0R4J5X01e-129A0A0R4J5X0_SOYBN; Uncharacterized protein
TrEMBLA0A445FX801e-129A0A445FX80_GLYSO; WRKY transcription factor 22
STRINGGLYMA18G47300.11e-130(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42053259
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.19e-64WRKY family protein