PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2776620.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | WRKY | ||||||||
Protein Properties | Length: 221aa MW: 24054.8 Da PI: 9.4666 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.1 | 2.7e-31 | 162 | 220 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC ++k+ver+++dp+++++tY+ eHnh+ Lj1g3v2776620.2 162 SDVWAWRKYGQKPIKGSPYPRGYYRCSSSkGCLARKQVERNRSDPTMFIVTYTAEHNHP 220 79*************************998****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-30 | 155 | 220 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 33.843 | 156 | 221 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.41E-26 | 159 | 220 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.3E-37 | 161 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-26 | 163 | 220 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MEEDWDLHAV VRGCTSTATT TTTTASAPAA SSSVSSSSVF TTCCLQKPEL SSSSGFSILE 60 GEQVLSFPAV AYPFESRDSI EELHELCKPF FSKSLQASSP LSSFSFSSSA APKSQDKQQQ 120 RSKQPHHGGS GSGSGSATTP RSKRRKTQLK KVCQVPVENL ASDVWAWRKY GQKPIKGSPY 180 PRGYYRCSSS KGCLARKQVE RNRSDPTMFI VTYTAEHNHP A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 1e-21 | 146 | 220 | 2 | 77 | Disease resistance protein RRS1 |
5w3x_D | 1e-21 | 146 | 220 | 2 | 77 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.13384 | 0.0 | root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in the expression of defense genes in innate immune response of plants. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Activates WRKY 29, SIRK and its own promoters. {ECO:0000269|PubMed:11875555}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00422 | DAP | Transfer from AT4G01250 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2776620.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced after flagellin treatment. {ECO:0000269|PubMed:11875555}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT093295 | 8e-77 | BT093295.1 Soybean clone JCVI-FLGm-17I1 unknown mRNA. | |||
GenBank | EU375344 | 8e-77 | EU375344.1 Glycine max transcription factor (WRKY10) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003534539.1 | 7e-86 | WRKY transcription factor 22 | ||||
Refseq | XP_028248358.1 | 7e-86 | WRKY transcription factor 22-like | ||||
Swissprot | O04609 | 8e-60 | WRK22_ARATH; WRKY transcription factor 22 | ||||
TrEMBL | A0A445J6B0 | 2e-84 | A0A445J6B0_GLYSO; WRKY transcription factor 22 | ||||
TrEMBL | I1L6F6 | 2e-84 | I1L6F6_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA09G39040.1 | 3e-85 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01250.1 | 5e-49 | WRKY family protein |