PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2740220.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | TALE | ||||||||
Protein Properties | Length: 627aa MW: 69767.6 Da PI: 6.208 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 29.3 | 1.5e-09 | 377 | 414 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe n+yp+ +e+ LA+++gL+ +qV +WF N R + Lj1g3v2740220.1 377 FEHflNPYPKDSEKIMLARQTGLSRNQVANWFINARVR 414 665569******************************88 PP | |||||||
2 | BELL | 124.1 | 5.4e-40 | 248 | 319 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erq l kk+kLls+l+eVdkrY+qy++q+q+v+ssF++v g+g+a+pYt+lAl++iSrhFrcL+dai++qi Lj1g3v2740220.1 248 ERQHLLDKKTKLLSMLDEVDKRYRQYCHQMQIVVSSFDMVSGCGAAEPYTALALRTISRHFRCLRDAISGQI 319 6889999****************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 4.5E-54 | 166 | 317 | IPR006563 | POX domain |
Pfam | PF07526 | 2.2E-49 | 173 | 316 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.746 | 355 | 418 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-27 | 357 | 431 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 2.0E-9 | 358 | 422 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.37E-12 | 358 | 419 | No hit | No description |
SuperFamily | SSF46689 | 1.58E-17 | 359 | 425 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.6E-17 | 375 | 414 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 627 aa Download sequence Send to blast |
MYPNQAFSSG SYAEMLSGSS MLPHNYSESV GGQNELKFMA SMGDNMTIQP MEEHSNAGAG 60 DSHVISRTQL GLVDIEQQNV QGQGLSLSLG TVMQSVPSFQ YQYPGSGFTS LMSSQIPNLK 120 GTEDEANLHK ELRNAECMTP VSSGGFHKRE DFYNPHQSDP YLHGAAGFSA NNVMNSQYLK 180 VAQELLDEIV NVRKPLKPTG LEKQQSFRDI GLDGSKDSDG KSTSQSMQMS SGPNGSTANS 240 SCELSPAERQ HLLDKKTKLL SMLDEVDKRY RQYCHQMQIV VSSFDMVSGC GAAEPYTALA 300 LRTISRHFRC LRDAISGQIQ VTQRSLGEQE GIPRLRNVDQ KLRQQKALQQ LGVMRQAWRP 360 QRGLPENSVS ILRAWLFEHF LNPYPKDSEK IMLARQTGLS RNQVANWFIN ARVRLWKPMV 420 EEMYKEEFGD SEMSSSNLLS ENTPKASRED VQVSGNKREE SQDKLTTIDS LQQQGQIHGL 480 KLDHASSTAE LDRGIQSGDD HGTNVMDFRT GKLHGDQRFN MNNSPYSSAP MQITHNGDGC 540 IMASTPATYD LADLGNFSTV GGHVSLALEL RNSENNGFGV SNDDTYKRHD QTLASSQEND 600 MLEYHFTDSG KQQHKFGNPH LLHEFVV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 1e-14 | 364 | 421 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 1e-14 | 364 | 421 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Lja.25905 | 0.0 | pod |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that is responsive of the nuclear import of SHOOT MERISTEMLESS (STM). {ECO:0000269|PubMed:16513846}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2740220.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT136990 | 0.0 | BT136990.1 Lotus japonicus clone JCVI-FLLj-16H21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003589334.1 | 0.0 | BEL1-like homeodomain protein 3 | ||||
Refseq | XP_024631180.1 | 0.0 | BEL1-like homeodomain protein 3 | ||||
Swissprot | Q9FWS9 | 1e-110 | BLH3_ARATH; BEL1-like homeodomain protein 3 | ||||
TrEMBL | A0A371GV08 | 0.0 | A0A371GV08_MUCPR; BEL1-like homeodomain protein 7 (Fragment) | ||||
STRING | AES59585 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2146 | 31 | 79 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G16400.1 | 1e-101 | BEL1-like homeodomain 7 |
Publications ? help Back to Top | |||
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