PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2623740.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family ERF
Protein Properties Length: 279aa    MW: 30485.7 Da    PI: 9.4431
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2623740.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.53.9e-192474256
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                     ++ GVr+++ +grWvAeI+d s   ++ r +lg+++t+e Aa+a+++a+++l+ge
  Lj1g3v2623740.1 24 RFIGVRQRP-SGRWVAEIKDSS---QHVRLWLGTYDTPEAAARAYDEAARALRGE 74
                     689******.7*********42...35**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.96E-182383No hitNo description
PROSITE profilePS5103220.3892481IPR001471AP2/ERF domain
PfamPF008472.7E-142474IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.3E-282483IPR001471AP2/ERF domain
SMARTSM003802.3E-342487IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-202482IPR016177DNA-binding domain
PRINTSPR003678.3E-72536IPR001471AP2/ERF domain
PRINTSPR003678.3E-74763IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MAEAEAKSVS KNVSQSNKLN TIKRFIGVRQ RPSGRWVAEI KDSSQHVRLW LGTYDTPEAA  60
ARAYDEAARA LRGENARTNF SESYYQTKQV SDGGKHGNGL SFASLKAKLS RNLQSIINRA  120
SDCNKSSKSR VSDHFTFASI FNRRSDQIQI PPMDVKSIEK VVQPSIVVPQ VEPDPPSWAG  180
FRQTRLDSGS GGSDEGELRV GDKGSLDQLM GWVDSPNIYA CDDDGSEGSR SKRFKVSPSV  240
LVPPTFNDCG SPFSGCGSPY NGYGSPYSGY RSPHYNGGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-1524841475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2623740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027337395.11e-118dehydration-responsive element-binding protein 2D-like
TrEMBLA0A4D6MN871e-110A0A4D6MN87_VIGUN; EREBP-like factor
STRINGXP_007134987.11e-110(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83243143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-18related to AP2 11