PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Lj1g3v2581160.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
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Family | LBD | ||||||||
Protein Properties | Length: 247aa MW: 25610 Da PI: 8.4059 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 125.8 | 2.1e-39 | 31 | 131 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C aCk+lrrkC+++C++apyf +eq +++fa+vh++FGasnv+kll ++p+++r da+ ++++eA+ar+rdPvyG+vg+i++lqqq++ l+ae Lj1g3v2581160.1 31 PCGACKFLRRKCVAGCIFAPYFDSEQgSAHFAAVHRIFGASNVSKLLLNIPPNRRLDAVITICFEAQARLRDPVYGCVGHIFALQQQVMALQAE 124 7***********************9989****************************************************************** PP DUF260 94 lallkee 100 + l+++ Lj1g3v2581160.1 125 ITFLQAH 131 *998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 23.461 | 30 | 132 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.2E-38 | 31 | 129 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
Sequence ? help Back to Top |
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Protein Sequence Length: 247 aa Download sequence Send to blast |
MSLNSCSSGG SGSGGNASGS GCGGGGSSSS PCGACKFLRR KCVAGCIFAP YFDSEQGSAH 60 FAAVHRIFGA SNVSKLLLNI PPNRRLDAVI TICFEAQARL RDPVYGCVGH IFALQQQVMA 120 LQAEITFLQA HIPTTELQMP PPPPPPQAAV APPAFSISDL PSTTTVAMPA ANYDLSALFD 180 PLPSWAVQQR AMDPRQYLAT GPSPTTSGAF HAVAREYAHR HGPAAPGPYG PHGPSSNASS 240 SLSKFSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-36 | 28 | 125 | 8 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-36 | 28 | 125 | 8 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and flowers (PubMed:12068116). Expressed in vascular tissues of hypocotyls, leaves, roots, developing floral organs and siliques (PubMed:19088331). {ECO:0000269|PubMed:12068116, ECO:0000269|PubMed:19088331}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes. {ECO:0000269|PubMed:19088331}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Lj1g3v2581160.1 |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP009073 | 0.0 | AP009073.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT43J08, TM1255, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012475250.1 | 2e-87 | PREDICTED: LOB domain-containing protein 18 | ||||
Refseq | XP_016682093.1 | 1e-87 | PREDICTED: LOB domain-containing protein 18-like | ||||
Swissprot | O81323 | 9e-67 | LBD30_ARATH; LOB domain-containing protein 30 | ||||
TrEMBL | A0A0D2MZ41 | 4e-86 | A0A0D2MZ41_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A1U8J0H6 | 3e-86 | A0A1U8J0H6_GOSHI; LOB domain-containing protein 18-like | ||||
STRING | Gorai.004G161100.1 | 6e-87 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00220.1 | 7e-64 | LBD family protein |
Publications ? help Back to Top | |||
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