PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v2348940.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

C2H2

Protein Properties

Length: 441aa MW: 48956.2 Da PI: 9.7562

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v2348940.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.4	1.2e-05	77	99	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Lj1g3v2348940.1 77 FVCEICNKGFQRDQNLQLHRRGH 99 89*******************88 PP
2	zf-C2H2	11.8	0.00077	153	175	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Lj1g3v2348940.1 153 WKCDKCSKIYAVQSDWKAHSKTC 175 58*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.38E-7	76	99	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	76	99	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.017	77	99	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.949	77	99	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.8E-5	77	99	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	79	99	IPR007087	Zinc finger, C2H2
SMART	SM00355	170	118	148	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	2.9E-4	141	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.38E-7	148	173	No hit	No description
SMART	SM00355	180	153	173	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MFPAVMSNSN SLSEEAPVSS AGTRTQDFSR LNHLVSTINS PQQPHKIKKK RSLPGNPDPD 60 AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNS KDIKKKAYVC 120 PEPSCVHHNP ARALGDLTGI KKHYCRKHGE KKWKCDKCSK IYAVQSDWKA HSKTCGTREY 180 RCDCGTLFSR KDSFITHRAF CDALAEESAR MSANQSTTTT TTNPLVQSLF LFPTQQQQNI 240 QNHMNPWFPS QQENPNPSNL APLTTTLHHN IKPDAQNFHL SSSSPTFLHH PKTIIASPPF 300 RDLHVPATSP YLSATALLQK AATFGAAAIT GQHAPPHQLS MSEFERPPPP LERSPPPPDT 360 KGGGPKPPPP RHTRDFLGLT GDGNGGAVDV SVGVKDMLTF TGVDYQQPHY NEHNHNSLFK 420 SQQQGFGLIR TTTAPESWGN C

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MFPAVMSNSN SLSEEAPVSS AGTRTQDFSR LNHLVSTINS PQQPHKIKKK RSLPGNPDPD  60
AEVIALSPKT LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLKQRNS KDIKKKAYVC  120
PEPSCVHHNP ARALGDLTGI KKHYCRKHGE KKWKCDKCSK IYAVQSDWKA HSKTCGTREY  180
RCDCGTLFSR KDSFITHRAF CDALAEESAR MSANQSTTTT TTNPLVQSLF LFPTQQQQNI  240
QNHMNPWFPS QQENPNPSNL APLTTTLHHN IKPDAQNFHL SSSSPTFLHH PKTIIASPPF  300
RDLHVPATSP YLSATALLQK AATFGAAAIT GQHAPPHQLS MSEFERPPPP LERSPPPPDT  360
KGGGPKPPPP RHTRDFLGLT GDGNGGAVDV SVGVKDMLTF TGVDYQQPHY NEHNHNSLFK  420
SQQQGFGLIR TTTAPESWGN C

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	7e-37	149	213	3	67	Zinc finger protein JACKDAW
5b3h_F	7e-37	149	213	3	67	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v2348940.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015041	1e-153	AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027366781.1	0.0	protein indeterminate-domain 12-like
Swissprot	O22759	1e-121	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A371FZ55	0.0	A0A371FZ55_MUCPR; Protein indeterminate-domain 12
STRING	XP_007144666.1	0.0	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF181	34	275

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02670.1	1e-122	indeterminate(ID)-domain 12

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]