PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2300730.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family MYB_related
Protein Properties Length: 165aa    MW: 18854.2 Da    PI: 6.2745
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2300730.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-07140162325
                      SS-HHHHHHHHHHHHHTTTT-HH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWk 25 
                      +WT+eE+ l++ + k++G+g+W+
  Lj1g3v2300730.1 140 PWTEEEHRLFLLGLKKYGKGDWR 162
                      8*********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007173.7E-72577IPR001005SANT/Myb domain
CDDcd001673.28E-52874No hitNo description
SuperFamilySSF466891.48E-112882IPR009057Homeodomain-like
PfamPF002491.1E-52873IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-6131163IPR009057Homeodomain-like
PROSITE profilePS5129410.206133165IPR017930Myb domain
SuperFamilySSF466895.54E-6134162IPR009057Homeodomain-like
CDDcd001672.67E-5140163No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNRGVEVLSP ASYLHNSNWL FQESKGAKWT PQENKLFENA LAYFDKDTPD RWLRVASMIP  60
GKTVGDVIKQ YKELEEDVCV IEAGLVPVPG YGADSFTLEW ANNHQGYDID DGFKQFYSVG  120
GKRGASCTRP SEQERKKGVP WTEEEHRLFL LGLKKYGKGD WRNTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-172691873RADIALIS
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.210590.0root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected in the apical inflorescence meristem, in bract primordia arising in its periphery and in floral meristems produced in the axils of bracts (stages 0-3). From stage 3 to stage 8, detected in all floral organs irrespective of their dorsoventral positions. From stage 9, barely detectable in bracts, sepals, and stamens. In the corolla, however, expression was maintained and enhanced in some regions. Within ventral and lateral petals at stage 9, asymmetric pattern of expression with high levels of transcripts in the inner epidermis of the furrow and very reduced levels in the remaining cell layers. In the dorsal petals, from stage 9 onward, detected but with a more even distribution across cell layers than in the ventral petal. {ECO:0000269|PubMed:11937495}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2300730.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020236097.11e-96transcription factor DIVARICATA
SwissprotQ8S9H76e-66DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A371I5611e-97A0A371I561_MUCPR; Transcription factor DIVARICATA (Fragment)
STRINGGLYMA07G17660.12e-93(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF46634162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.11e-74MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]