PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2295200.4
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family Nin-like
Protein Properties Length: 583aa    MW: 64730.6 Da    PI: 6.9763
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2295200.4genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK90.31.6e-28393443252
           RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                       k+i+le+l++yF +++kdAAk++gvc+T+LKr CRq+GIkRWP+Rkik++
  Lj1g3v2295200.4 393 DKTITLEVLRQYFPGSLKDAAKNIGVCTTTLKRVCRQHGIKRWPSRKIKKV 443
                      689**********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151918.167382463IPR003035RWP-RK domain
PfamPF020421.6E-24395443IPR003035RWP-RK domain
Sequence ? help Back to Top
Protein Sequence    Length: 583 aa     Download sequence    Send to blast
MLIQIWVPVP REEDSKELVP GLPGRVFRDK VPEWTPDVRF FRSDEYPRVE HAREFDICGT  60
LAVPIFEQGS RTCLGVIEVV MTTQQINYVP QLESVCKALE VVDLTSLKHS SIQNAKARDK  120
SYEAALPEIQ EVLRSACHMH KLPLAQTWVS CFQQGKDGCR HSEDNYLHCI SPVEQACYVG  180
DPSVRFFHEA CMEHHLLKGQ GVAGKAFMIN QPFFSTDITM LSKTDYPLSH HARLFGLRAA  240
VAIRLRSIYS SADDYVLEFF LPVNCNDSEE QKNMLISLSI IIQRCCRSLR VITDKELERT  300
SSSVEVMALE DSGFARTVKW SEPQHITSVA SLEPEEKSSE TVGGKFSDLR EHQEDSILKG  360
NIECDRECSP FVEGNLSSVG ISKTGEKRRA KADKTITLEV LRQYFPGSLK DAAKNIGVCT  420
TTLKRVCRQH GIKRWPSRKI KKVGHSLQKL QLVIDSVQGA SGASFKIDSF YSNFPDLASP  480
NLSGASLVSA LNQSENPNSL SIQPDLGPLS PEGATKSLSS SCSQGSLSSH SCSSMPEQQP  540
HTSDVACNKD PVVGKDSADV VLKRIRSEAE LKSHSENKAK LFP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.58840.0pod| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2295200.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5799100.0AJ579910.1 Lotus corniculatus var. japonicus mRNA for NIN-like protein 1.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354743.10.0protein NLP4-like isoform X2
RefseqXP_027354744.10.0protein NLP4-like isoform X2
RefseqXP_027354745.10.0protein NLP4-like isoform X2
SwissprotQ9LE381e-177NLP4_ARATH; Protein NLP4
SwissprotQ9SFW81e-177NLP5_ARATH; Protein NLP5
TrEMBLQ7X9C10.0Q7X9C1_LOTJA; NIN-like protein 1
STRINGGLYMA06G02030.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.11e-179Nin-like family protein
Publications ? help Back to Top
  1. Schauser L,Wieloch W,Stougaard J
    Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus.
    J. Mol. Evol., 2005. 60(2): p. 229-37
    [PMID:15785851]