PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v2295200.2

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

Nin-like

Protein Properties

Length: 782aa MW: 86713.8 Da PI: 5.6246

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v2295200.2	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	89.7	2.3e-28	592	642	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 k+i+le+l++yF +++kdAAk++gvc+T+LKr CRq+GIkRWP+Rkik++ Lj1g3v2295200.2 592 DKTITLEVLRQYFPGSLKDAAKNIGVCTTTLKRVCRQHGIKRWPSRKIKKV 642 689**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	18.167	581	662	IPR003035	RWP-RK domain
Pfam	PF02042	2.3E-24	594	642	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MGDGAVTTTS AAMMEAPTNE TSMDFEYMSD LLLDGCWLEA SADGSNFLLQ QSPPFSSPLF 60 DPSFSWPALE TNEPTHVEDQ HESQEAPLGN TQLVSQSQNM VNVVDGRYNN QSETETHSVV 120 EGTSDGVKRW WIAPTCSPGL GPSIMEKLIR ALKWIKQFNW NKDMLIQIWV PVPRGDRPIL 180 SANNLPFSLD SGSENLARYR EISEGFQFSA EEDSKELVPG LPGRVFRDKV PEWTPDVRFF 240 RSDEYPRVEH AREFDICGTL AVPIFEQGSR TCLGVIEVVM TTQQINYVPQ LESVCKALEV 300 VDLTSLKHSS IQNAKARDKS YEAALPEIQE VLRSACHMHK LPLAQTWVSC FQQGKDGCRH 360 SEDNYLHCIS PVEQACYVGD PSVRFFHEAC MEHHLLKGQG VAGKAFMINQ PFFSTDITML 420 SKTDYPLSHH ARLFGLRAAV AIRLRSIYSS ADDYVLEFFL PVNCNDSEEQ KNMLISLSII 480 IQRCCRSLRV ITDKELERTS SSVEVMALED SGFARTVKWS EPQHITSVAS LEPEEKSSET 540 VGGKFSDLRE HQEDSILKGN IECDRECSPF VEGNLSSVGI SKTGEKRRAK ADKTITLEVL 600 RQYFPGSLKD AAKNIGVCTT TLKRVCRQHG IKRWPSRKIK KVGHSLQKLQ LVIDSVQGAS 660 GASFKIDSFY SNFPDLASPN LSGASLVSAL NQSENPNSLS IQPDLGPLSP EGATKSLSSS 720 CSQGSLSSHS CSSMPEQQPH TSDVACNKDP VVGKDSADVV LKRIRSEAEL KSHSENKAKL 780 FP

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MGDGAVTTTS AAMMEAPTNE TSMDFEYMSD LLLDGCWLEA SADGSNFLLQ QSPPFSSPLF  60
DPSFSWPALE TNEPTHVEDQ HESQEAPLGN TQLVSQSQNM VNVVDGRYNN QSETETHSVV  120
EGTSDGVKRW WIAPTCSPGL GPSIMEKLIR ALKWIKQFNW NKDMLIQIWV PVPRGDRPIL  180
SANNLPFSLD SGSENLARYR EISEGFQFSA EEDSKELVPG LPGRVFRDKV PEWTPDVRFF  240
RSDEYPRVEH AREFDICGTL AVPIFEQGSR TCLGVIEVVM TTQQINYVPQ LESVCKALEV  300
VDLTSLKHSS IQNAKARDKS YEAALPEIQE VLRSACHMHK LPLAQTWVSC FQQGKDGCRH  360
SEDNYLHCIS PVEQACYVGD PSVRFFHEAC MEHHLLKGQG VAGKAFMINQ PFFSTDITML  420
SKTDYPLSHH ARLFGLRAAV AIRLRSIYSS ADDYVLEFFL PVNCNDSEEQ KNMLISLSII  480
IQRCCRSLRV ITDKELERTS SSVEVMALED SGFARTVKWS EPQHITSVAS LEPEEKSSET  540
VGGKFSDLRE HQEDSILKGN IECDRECSPF VEGNLSSVGI SKTGEKRRAK ADKTITLEVL  600
RQYFPGSLKD AAKNIGVCTT TLKRVCRQHG IKRWPSRKIK KVGHSLQKLQ LVIDSVQGAS  660
GASFKIDSFY SNFPDLASPN LSGASLVSAL NQSENPNSLS IQPDLGPLSP EGATKSLSSS  720
CSQGSLSSHS CSSMPEQQPH TSDVACNKDP VVGKDSADVV LKRIRSEAEL KSHSENKAKL  780
FP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Lja.5884	0.0	pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v2295200.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ579910	0.0	AJ579910.1 Lotus corniculatus var. japonicus mRNA for NIN-like protein 1.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027354743.1	0.0	protein NLP4-like isoform X2
Refseq	XP_027354744.1	0.0	protein NLP4-like isoform X2
Refseq	XP_027354745.1	0.0	protein NLP4-like isoform X2
Swissprot	Q9SFW8	0.0	NLP5_ARATH; Protein NLP5
TrEMBL	Q7X9C1	0.0	Q7X9C1_LOTJA; NIN-like protein 1
STRING	GLYMA06G02030.2	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76350.1	0.0	Nin-like family protein

Publications ? help Back to Top
Schauser L,Wieloch W,Stougaard J Evolution of NIN-like proteins in Arabidopsis, rice, and Lotus japonicus. J. Mol. Evol., 2005. 60(2): p. 229-37 [PMID:15785851]