PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2153410.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family BBR-BPC
Protein Properties Length: 143aa    MW: 15700.8 Da    PI: 9.2913
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2153410.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind269.71.5e-8227143185301
        GAGA_bind 185 erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGyd 278
                        ska++k +dl+ln+v++Dest+P+PvCsCtG+lrqCYkWGnGGWqS+CCttt+S+yPLP+++++r+aR++grKmS++af+klL++LaaeG+d
  Lj1g3v2153410.1  27 GVSKADWKGQDLGLNQVAYDESTMPAPVCSCTGVLRQCYKWGNGGWQSSCCTTTLSMYPLPAVPNKRHARVGGRKMSGSAFSKLLSRLAAEGHD 120
                      349******************************************************************************************* PP

        GAGA_bind 279 lsnpvDLkdhWAkHGtnkfvtir 301
                      lsnpvDLkdhWAkHGtn+++ti+
  Lj1g3v2153410.1 121 LSNPVDLKDHWAKHGTNRYITIK 143
                      **********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012261.1E-581143IPR010409GAGA-binding transcriptional activator
PfamPF062171.7E-7823143IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 143 aa     Download sequence    Send to blast
MMFGKGHDWK SGQEMVNGGD DLNRQLGVSK ADWKGQDLGL NQVAYDESTM PAPVCSCTGV  60
LRQCYKWGNG GWQSSCCTTT LSMYPLPAVP NKRHARVGGR KMSGSAFSKL LSRLAAEGHD  120
LSNPVDLKDH WAKHGTNRYI TIK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.138670.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2153410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0936101e-151BT093610.1 Soybean clone JCVI-FLGm-24C8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242458.21e-101basic pentacysteine 6
RefseqXP_006577804.11e-101basic pentacysteine 6 isoform X1
SwissprotQ8L9991e-74BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLC6T8J31e-99C6T8J3_SOYBN; Uncharacterized protein
STRINGGLYMA04G02860.11e-100(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.32e-77basic pentacysteine 6