PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lj1g3v2153400.1
Organism
Lotus japonicus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus
Family BBR-BPC
Protein Properties Length: 185aa    MW: 20705.5 Da    PI: 10.2692
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Lj1g3v2153400.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind120.93.1e-3711811174
        GAGA_bind   1 mdddgsre..rnkg.yye........pa.aslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkll 82 
                      mdd g++e  r+k+  y+        ++ +s+     +q+m+++aerda+++ernlalsekk a+aerdmaflqrd+a+aern+a++erdn+++
  Lj1g3v2153400.1   1 MDDAGHHEngRHKTdPYKtaqgqwllQHqPSM-----KQIMAIMAERDAALQERNLALSEKKTALAERDMAFLQRDTAIAERNNAIMERDNAIA 89 
                      99999988899999888855544444222344.....5******************************************************** PP

        GAGA_bind  83 alllvensla....salpvgvqvlsgtksidslqq.lse.pqledsavelreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkk 170
                      al++++ns +    +a+p+g+q+++g+k+i++ qq +++ +++++ ++ +re+++++alp +   +ea ++++++      +pke k+ +++kk
  Lj1g3v2153400.1  90 ALQYRDNSFTggniQACPPGCQISRGVKHIHHPQQqVHHlTNMGEASYSTREMHTSDALPAVPISPEAVKSRRVR------RPKEAKSISPNKK 177
                      *******99999999******************99556689****************999777777666655554......3333333333333 PP

        GAGA_bind 171 seks 174
                      ++k 
  Lj1g3v2153400.1 178 TSKA 181
                      3332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012263.7E-201184IPR010409GAGA-binding transcriptional activator
PfamPF062171.0E-221183IPR010409GAGA-binding transcriptional activator
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDDAGHHENG RHKTDPYKTA QGQWLLQHQP SMKQIMAIMA ERDAALQERN LALSEKKTAL  60
AERDMAFLQR DTAIAERNNA IMERDNAIAA LQYRDNSFTG GNIQACPPGC QISRGVKHIH  120
HPQQQVHHLT NMGEASYSTR EMHTSDALPA VPISPEAVKS RRVRRPKEAK SISPNKKTSK  180
AAKKI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Lja.138670.0cell culture
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, leaves and pistils. Detected in the base of flowers and tips of carpels, in sepal vasculature, in young rosette, in the lateral and tip of primary roots, and in ovule at the exception of the outer integument. {ECO:0000269|PubMed:14731261, ECO:0000269|PubMed:21435046}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269|PubMed:14731261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapLj1g3v2153400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1373530.0BT137353.1 Lotus japonicus clone JCVI-FLLj-16J1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027354256.11e-109protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354257.11e-109protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354258.11e-109protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354259.11e-109protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354260.11e-109protein BASIC PENTACYSTEINE6 isoform X1
RefseqXP_027354261.11e-109protein BASIC PENTACYSTEINE6 isoform X1
SwissprotQ8L9991e-66BPC6_ARATH; Protein BASIC PENTACYSTEINE6
TrEMBLA0A371G1G21e-108A0A371G1G2_MUCPR; Protein BASIC PENTACYSTEINE6 (Fragment)
STRINGGLYMA04G02860.11e-105(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69053449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42520.16e-69basic pentacysteine 6