PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lj1g3v2140900.1

Organism

Lotus japonicus

Taxonomic ID

34305

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Loteae; Lotus

Family

SRS

Protein Properties

Length: 270aa MW: 29397.8 Da PI: 8.2944

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Lj1g3v2140900.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	174.7	4.5e-54	78	207	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 g+++CqdCGnqakkdCah RCRtCCk+rgf C+thvkstW+paakrrerq +++ +kr+ + + s s Lj1g3v2140900.1 78 GGGVNCQDCGNQAKKDCAHLRCRTCCKTRGFPCQTHVKSTWIPAAKRRERQLLRGGE--------DNNVPKRHSS---NPPS-----------S 149 5789*******************************************97655543........2222333322...1222...........2 PP DUF702 97 kkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ++ le+ ++P+ev+s+avfrcvrvs+v+ +ee +aYqt v+igGhvfkGiLydqG+e+ Lj1g3v2140900.1 150 TTGLEAGQFPTEVNSTAVFRCVRVSGVECAEERCAYQTCVNIGGHVFKGILYDQGPES 207 23467789**********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	2.7E-51	80	206	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	9.8E-26	82	124	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	2.9E-24	157	205	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 270 aa Download sequence Send to blast
MAGLFSLGPQ NKLEVEKEES SVLWFRNEEI YNNNNKGFEI WPPQQNLLNY NNEEITSLCE 60 AASRRRFGMM MSRRGGGGGG VNCQDCGNQA KKDCAHLRCR TCCKTRGFPC QTHVKSTWIP 120 AAKRRERQLL RGGEDNNVPK RHSSNPPSST TGLEAGQFPT EVNSTAVFRC VRVSGVECAE 180 ERCAYQTCVN IGGHVFKGIL YDQGPESSYT TSTVVGEGSS AGGGGAKQLG FVTATNTATT 240 SGNPYFDPSL YPAPLNAFMA GTHFFPPSRS

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371, PubMed:24142382). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371, PubMed:24142382). Acts synergistically with MYC1 in the transactivation of TPS5 (PubMed:24884371). {ECO:0000269\|PubMed:24142382, ECO:0000269\|PubMed:24884371}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Lj1g3v2140900.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP006110	0.0	AP006110.1 Lotus japonicus genomic DNA, chromosome 1, clone: LjT39G11, TM0195b, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027356528.1	1e-112	protein SHI RELATED SEQUENCE 5-like
Swissprot	K4B6C9	5e-71	EOT1_SOLLC; Protein EXPRESSION OF TERPENOIDS 1
TrEMBL	A0A371DZR6	1e-106	A0A371DZR6_MUCPR; Protein SHI RELATED SEQUENCE 5 (Fragment)
STRING	XP_007136048.1	1e-99	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	1e-62	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Spyropoulou EA,Haring MA,Schuurink RC RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters. BMC Genomics, 2014. 15: p. 402 [PMID:24884371]